Variant report

Variant	rs538117355
Chromosome Location	chr9:100566046-100566047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100553353..100555259-chr9:100563805..100566099,2	MCF-7	breast:
2	chr9:100548531..100552481-chr9:100563456..100568278,5	MCF-7	breast:
3	chr9:100476522..100478134-chr9:100564104..100567075,2	K562	blood:
4	chr9:100512323..100515740-chr9:100564209..100566797,3	MCF-7	breast:
5	chr9:100564515..100567893-chr9:100582298..100586043,4	MCF-7	breast:
6	chr9:100475511..100477601-chr9:100564696..100566585,2	MCF-7	breast:
7	chr9:100459437..100460978-chr9:100564253..100567153,2	MCF-7	breast:
8	chr9:100529991..100532148-chr9:100565472..100567018,2	MCF-7	breast:
9	chr9:100565524..100567505-chr9:100607472..100609592,3	MCF-7	breast:
10	chr9:100564653..100566518-chr9:100684080..100685745,2	MCF-7	breast:
11	chr9:100458131..100460553-chr9:100565318..100568511,3	MCF-7	breast:
12	chr9:100563780..100567057-chr9:100567518..100571604,5	K562	blood:
13	chr9:100552530..100555931-chr9:100564529..100567478,4	MCF-7	breast:
14	chr9:100513670..100516311-chr9:100564353..100566639,2	MCF-7	breast:
15	chr9:100564087..100566855-chr9:100614362..100616413,2	MCF-7	breast:
16	chr9:100473042..100473573-chr9:100565746..100566684,3	MCF-7	breast:
17	chr9:100470983..100474278-chr9:100563427..100567562,3	MCF-7	breast:
18	chr13:50510512..50511013-chr9:100565675..100566175,2	NB4	blood:
19	chr9:100560448..100563206-chr9:100564370..100567117,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178919	Chromatin interaction
ENSG00000123178	Chromatin interaction
ENSG00000136936	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3338700	chr9:100564756-100567504	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100564800-100566400	Active TSS	A549	lung
2	chr9:100565200-100566200	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr9:100565400-100566200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:100565400-100566200	Active TSS	H1 Cell Line	embryonic stem cell
5	chr9:100565400-100566200	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr9:100565400-100566200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr9:100565400-100566200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr9:100565400-100566200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:100565400-100566200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr9:100565400-100566200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
11	chr9:100565400-100566200	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr9:100565400-100566200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:100565400-100566200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
14	chr9:100565400-100566200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:100565400-100566200	Active TSS	Brain Angular Gyrus	brain
16	chr9:100565400-100566200	Active TSS	Brain Cingulate Gyrus	brain
17	chr9:100565400-100566200	Active TSS	Colonic Mucosa	Colon
18	chr9:100565400-100566200	Active TSS	Fetal Intestine Large	intestine
19	chr9:100565400-100566200	Active TSS	Fetal Intestine Small	intestine
20	chr9:100565400-100566200	Bivalent/Poised TSS	Fetal Stomach	stomach
21	chr9:100565400-100566200	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr9:100565400-100566200	Bivalent/Poised TSS	Thymus	Thymus
23	chr9:100565400-100566200	Active TSS	GM12878-XiMat	blood
24	chr9:100565400-100566200	Active TSS	HepG2	liver
25	chr9:100565400-100566200	Active TSS	K562	blood
26	chr9:100565400-100566200	Active TSS	NHDF-Ad	bronchial
27	chr9:100565400-100566200	Active TSS	NHLF	lung
28	chr9:100565400-100566400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr9:100565400-100566400	Active TSS	H9 Cell Line	embryonic stem cell
30	chr9:100565400-100566400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:100565400-100566400	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr9:100565400-100566400	Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr9:100565400-100566400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:100565400-100566400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:100565400-100566400	Active TSS	Brain Substantia Nigra	brain
36	chr9:100565400-100566400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
37	chr9:100565400-100566400	Bivalent/Poised TSS	Fetal Kidney	kidney
38	chr9:100565400-100566400	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr9:100565400-100566400	Active TSS	Rectal Smooth Muscle	rectum
40	chr9:100565400-100566600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:100565400-100566600	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr9:100565400-100566800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
43	chr9:100565400-100566800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
44	chr9:100565400-100567000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:100565600-100566200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr9:100565600-100566200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:100565600-100566200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:100565600-100566200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:100565600-100566200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr9:100565600-100566200	Active TSS	Liver	Liver

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