Variant report

Variant	rs538120164
Chromosome Location	chr10:91295786-91295787
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD1	chr10:91295545-91295838	H1-hESC	embryonic stem cell:	n/a	chr10:91295780-91295790 chr10:91295565-91295575
2	POLR2A	chr10:91294949-91295991	H1-hESC	embryonic stem cell:	n/a	n/a
3	E2F6	chr10:91294689-91295989	H1-hESC	embryonic stem cell:	n/a	chr10:91295386-91295395 chr10:91295424-91295433
4	E2F6	chr10:91294820-91295955	H1-hESC	embryonic stem cell:	n/a	chr10:91295386-91295395 chr10:91295424-91295433
5	TAF1	chr10:91295414-91295899	H1-hESC	embryonic stem cell:	n/a	n/a
6	ZNF263	chr10:91295574-91295957	HEK293-T-REx	kidney:	n/a	n/a
7	POLR2A	chr10:91295427-91295821	H1-hESC	embryonic stem cell:	n/a	n/a
8	GABPA	chr10:91295411-91295872	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr10:91295421-91295891	H1-hESC	embryonic stem cell:	n/a	n/a
10	CEBPB	chr10:91295652-91295970	H1-hESC	embryonic stem cell:	n/a	n/a
11	SIN3A	chr10:91294832-91295789	H1-hESC	embryonic stem cell:	n/a	chr10:91295145-91295154 chr10:91295345-91295356 chr10:91295695-91295708 chr10:91295138-91295151
12	POLR2A	chr10:91295079-91295878	H1-hESC	embryonic stem cell:	n/a	n/a
13	TEAD4	chr10:91295384-91295787	H1-hESC	embryonic stem cell:	n/a	n/a
14	CHD2	chr10:91295642-91295914	H1-hESC	embryonic stem cell:	n/a	chr10:91295780-91295790
15	CTCF	chr10:91295640-91295790	SAEC	small airway:	n/a	n/a
16	TBP	chr10:91295039-91295859	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
SLC16A12	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv932413	chr10:91294861-91300246	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91293200-91296000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:91293800-91295800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr10:91293800-91295800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:91293800-91296000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:91293800-91296200	Active TSS	Pancreas	Pancrea
6	chr10:91294000-91296000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:91294000-91296000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:91294000-91296000	Weak transcription	Fetal Heart	heart
9	chr10:91294000-91296000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr10:91294000-91296200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:91294200-91295800	Active TSS	Left Ventricle	heart
12	chr10:91294200-91295800	Bivalent/Poised TSS	Psoas Muscle	Psoas
13	chr10:91294200-91295800	Active TSS	Right Ventricle	heart
14	chr10:91294400-91295800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
15	chr10:91294400-91295800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr10:91294400-91295800	Bivalent/Poised TSS	A549	lung
17	chr10:91294400-91295800	Bivalent/Poised TSS	NH-A	brain
18	chr10:91294600-91295800	Bivalent Enhancer	Fetal Thymus	thymus
19	chr10:91294600-91296000	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr10:91294600-91296000	Active TSS	Right Atrium	heart
21	chr10:91294800-91295800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr10:91294800-91295800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr10:91294800-91295800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:91294800-91295800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:91294800-91295800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:91294800-91295800	Active TSS	Aorta	Aorta
27	chr10:91294800-91295800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
28	chr10:91294800-91295800	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
29	chr10:91294800-91295800	Bivalent Enhancer	Stomach Mucosa	stomach
30	chr10:91294800-91295800	Bivalent/Poised TSS	Thymus	Thymus
31	chr10:91294800-91295800	Active TSS	HSMM	muscle
32	chr10:91294800-91296000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:91294800-91296000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:91294800-91296000	Bivalent/Poised TSS	HepG2	liver
35	chr10:91294800-91296200	Active TSS	HSMMtube	muscle
36	chr10:91295000-91295800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:91295000-91295800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:91295000-91295800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
39	chr10:91295000-91295800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:91295000-91295800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
41	chr10:91295000-91295800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
42	chr10:91295000-91295800	Enhancers	Gastric	stomach
43	chr10:91295000-91295800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
44	chr10:91295000-91296000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:91295000-91296000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
46	chr10:91295000-91296000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:91295000-91296000	Flanking Active TSS	Liver	Liver
48	chr10:91295000-91296000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
49	chr10:91295000-91296000	Bivalent/Poised TSS	NHEK	skin
50	chr10:91295200-91295800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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