Variant report

Variant	rs538200029
Chromosome Location	chr9:8865477-8865478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3326942	chr9:8865090-8872652	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3483609	chr9:8865135-8872711	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3483610	chr9:8865149-8872716	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8858800-8871400	Enhancers	Fetal Heart	heart
2	chr9:8859400-8870800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:8859600-8866400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:8860200-8867400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:8860800-8867200	Weak transcription	Brain Germinal Matrix	brain
6	chr9:8861200-8867400	Weak transcription	Fetal Brain Female	brain
7	chr9:8863000-8868200	Enhancers	Brain Cingulate Gyrus	brain
8	chr9:8863400-8868200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:8863400-8872000	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:8863600-8865600	Weak transcription	Brain Substantia Nigra	brain
11	chr9:8864000-8866000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:8864600-8868800	Weak transcription	Small Intestine	intestine
13	chr9:8864600-8870800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:8864800-8865600	Weak transcription	Ovary	ovary
15	chr9:8864800-8867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:8864800-8867000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:8864800-8867000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:8864800-8867200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:8864800-8867200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:8864800-8868600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:8864800-8868600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:8864800-8869400	Weak transcription	Aorta	Aorta
23	chr9:8864800-8869400	Weak transcription	Fetal Intestine Small	intestine
24	chr9:8864800-8870800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:8864800-8870800	Enhancers	Brain Anterior Caudate	brain
26	chr9:8865000-8866400	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:8865000-8866800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:8865000-8866800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:8865000-8867000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:8865000-8867200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr9:8865000-8867200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:8865000-8868800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:8865000-8868800	Weak transcription	NH-A	brain
34	chr9:8865200-8865800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:8865400-8865600	Enhancers	Brain Angular Gyrus	brain

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