Variant report

Variant	rs538281344
Chromosome Location	chr3:141291315-141291316
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141279547..141282126-chr3:141289816..141292776,2	K562	blood:
2	chr3:141205222..141206757-chr3:141290019..141291835,2	K562	blood:
3	chr3:141289820..141291967-chr3:141293825..141295688,2	MCF-7	breast:
4	chr3:141173922..141177182-chr3:141288723..141292910,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1795799	chr3:141284383-141301451	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1794809	chr3:141290177-141304631	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141236400-141301000	Weak transcription	Brain Substantia Nigra	brain
2	chr3:141236400-141306600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:141236600-141297000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:141236600-141299400	Weak transcription	Gastric	stomach
5	chr3:141237000-141299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:141243400-141299400	Weak transcription	Spleen	Spleen
7	chr3:141254600-141294400	Weak transcription	Esophagus	oesophagus
8	chr3:141254800-141291400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:141254800-141292200	Weak transcription	Left Ventricle	heart
10	chr3:141254800-141295200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:141254800-141299200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:141254800-141299400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:141254800-141299400	Weak transcription	Right Ventricle	heart
14	chr3:141254800-141319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:141255200-141304800	Weak transcription	Ovary	ovary
16	chr3:141255200-141320000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:141255400-141319200	Weak transcription	Aorta	Aorta
18	chr3:141257000-141300200	Weak transcription	Pancreas	Pancrea
19	chr3:141263600-141292000	Weak transcription	Colonic Mucosa	Colon
20	chr3:141265200-141336200	Weak transcription	Psoas Muscle	Psoas
21	chr3:141267400-141295000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:141268400-141297800	Weak transcription	Fetal Heart	heart
23	chr3:141269200-141294400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:141271200-141299400	Weak transcription	Brain Angular Gyrus	brain
25	chr3:141272400-141291400	Weak transcription	GM12878-XiMat	blood
26	chr3:141272600-141319200	Strong transcription	Dnd41	blood
27	chr3:141275800-141320600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:141276000-141299400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:141276200-141291400	Weak transcription	Fetal Brain Female	brain
30	chr3:141276200-141297000	Weak transcription	Lung	lung
31	chr3:141276400-141329400	Weak transcription	Small Intestine	intestine
32	chr3:141276600-141291400	Weak transcription	Fetal Lung	lung
33	chr3:141276600-141292200	Weak transcription	HSMMtube	muscle
34	chr3:141277200-141297000	Weak transcription	Thymus	Thymus
35	chr3:141277200-141341400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr3:141277400-141293600	Weak transcription	Fetal Kidney	kidney
37	chr3:141277600-141296400	Weak transcription	Hela-S3	cervix
38	chr3:141277800-141312000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr3:141278000-141296800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:141279200-141292200	Weak transcription	NHLF	lung
41	chr3:141281800-141297000	Weak transcription	Fetal Intestine Small	intestine
42	chr3:141281800-141329400	Weak transcription	Fetal Brain Male	brain
43	chr3:141283400-141295000	Weak transcription	Colon Smooth Muscle	Colon
44	chr3:141284000-141291800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr3:141284600-141292200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:141284600-141299200	Weak transcription	Fetal Stomach	stomach
47	chr3:141288000-141312400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:141288200-141294400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:141288200-141294800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr3:141288200-141295200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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