Variant report

Variant	rs538292703
Chromosome Location	chr4:85590990-85590991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85588965..85591887-chr4:85592148..85593704,2	MCF-7	breast:
2	chr4:85590141..85592930-chr4:85595818..85598375,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85571000-85592400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:85577600-85592400	Weak transcription	Aorta	Aorta
3	chr4:85581800-85593200	Weak transcription	Right Ventricle	heart
4	chr4:85581800-85598200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:85581800-85598200	Weak transcription	Esophagus	oesophagus
6	chr4:85581800-85599000	Weak transcription	Spleen	Spleen
7	chr4:85582000-85591000	Weak transcription	Ovary	ovary
8	chr4:85582000-85592200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:85582000-85593000	Weak transcription	Colonic Mucosa	Colon
10	chr4:85582000-85593200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:85582000-85595000	Weak transcription	NHLF	lung
12	chr4:85582000-85596200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:85582000-85598200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:85582600-85591400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:85582800-85593000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:85582800-85603000	Weak transcription	Small Intestine	intestine
17	chr4:85583000-85598000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:85583200-85596800	Weak transcription	Fetal Heart	heart
19	chr4:85583400-85591200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:85583800-85593200	Weak transcription	Gastric	stomach
21	chr4:85583800-85593200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:85584000-85593000	Weak transcription	HepG2	liver
23	chr4:85584200-85591200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:85584200-85593800	Weak transcription	Fetal Intestine Small	intestine
25	chr4:85585000-85593000	Weak transcription	Brain Substantia Nigra	brain
26	chr4:85586000-85592200	Weak transcription	HMEC	breast
27	chr4:85586400-85591000	Weak transcription	Fetal Brain Male	brain
28	chr4:85586400-85591400	Weak transcription	NHDF-Ad	bronchial
29	chr4:85586400-85592400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:85586400-85602000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:85586800-85594800	Weak transcription	A549	lung
32	chr4:85586800-85602200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:85587200-85593000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr4:85587200-85594200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:85587400-85595200	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:85587400-85595600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:85587600-85594400	Strong transcription	HSMM	muscle
38	chr4:85587600-85602600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:85587600-85603400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr4:85587800-85593200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:85587800-85594000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr4:85587800-85594000	Strong transcription	Fetal Kidney	kidney
43	chr4:85587800-85594000	Strong transcription	HSMMtube	muscle
44	chr4:85587800-85602600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr4:85587800-85648400	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr4:85588000-85592000	Weak transcription	Brain Anterior Caudate	brain
47	chr4:85588000-85593600	Weak transcription	Colon Smooth Muscle	Colon
48	chr4:85588000-85594200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:85588000-85595000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:85588000-85595600	Strong transcription	Placenta	Placenta

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