Variant report

Variant	rs538324491
Chromosome Location	chr5:36885584-36885585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv964843	chr5:36885131-36887084	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36879000-36885600	Weak transcription	Placenta	Placenta
2	chr5:36879200-36885600	Weak transcription	Colonic Mucosa	Colon
3	chr5:36879200-36885800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:36879200-36885800	Weak transcription	Small Intestine	intestine
5	chr5:36879200-36889400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr5:36879400-36885600	Weak transcription	HSMM	muscle
7	chr5:36879400-36885800	Weak transcription	Psoas Muscle	Psoas
8	chr5:36879400-36887400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:36879600-36889400	Weak transcription	HSMMtube	muscle
10	chr5:36879800-36891400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:36880000-36889000	Weak transcription	Brain Anterior Caudate	brain
12	chr5:36880000-36891200	Weak transcription	Fetal Brain Female	brain
13	chr5:36880000-36897400	Weak transcription	NHLF	lung
14	chr5:36880200-36885600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:36880400-36897800	Weak transcription	HUVEC	blood vessel
16	chr5:36881000-36899800	Weak transcription	Brain Substantia Nigra	brain
17	chr5:36881000-36900600	Weak transcription	Osteobl	bone
18	chr5:36881200-36885600	Weak transcription	Fetal Lung	lung
19	chr5:36881200-36885600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:36881200-36887400	Weak transcription	HMEC	breast
21	chr5:36881200-36890600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:36881200-36892400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:36881200-36900400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:36881400-36885600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr5:36881400-36897400	Weak transcription	NHDF-Ad	bronchial
26	chr5:36881600-36885600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:36881600-36885600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:36881600-36885600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr5:36881600-36885800	Weak transcription	Brain Germinal Matrix	brain
30	chr5:36881600-36887200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:36881800-36885600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:36881800-36885600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr5:36881800-36895400	Weak transcription	Fetal Kidney	kidney
34	chr5:36882400-36885800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr5:36882400-36899800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:36882600-36885600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr5:36882600-36885600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:36882600-36885600	Weak transcription	Stomach Mucosa	stomach
39	chr5:36882600-36887600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr5:36882800-36885600	Weak transcription	Adipose Nuclei	Adipose
41	chr5:36882800-36885600	Weak transcription	Hela-S3	cervix
42	chr5:36882800-36885600	Weak transcription	K562	blood
43	chr5:36882800-36885600	Weak transcription	NHEK	skin
44	chr5:36882800-36885800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr5:36882800-36885800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:36882800-36886800	Weak transcription	HepG2	liver
47	chr5:36882800-36891400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:36883000-36887400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:36883200-36887400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr5:36883400-36887400	Weak transcription	Colon Smooth Muscle	Colon

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