The 2.0 version of rSNPBase

Variant report

Variant rs538346793
Chromosome Location chr20:16389911-16389912
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16345000-16391200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr20:16345400-16391000 Weak transcription Brain Germinal Matrix brain
3 chr20:16346600-16393600 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr20:16347600-16392000 Weak transcription Fetal Kidney kidney
5 chr20:16366400-16391400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr20:16372600-16404600 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr20:16375400-16392600 Weak transcription NH-A brain
8 chr20:16375400-16396400 Weak transcription Stomach Mucosa stomach
9 chr20:16378000-16391200 Weak transcription Brain Cingulate Gyrus brain
10 chr20:16378000-16404400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr20:16378600-16391200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr20:16378800-16391200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr20:16378800-16393400 Strong transcription Rectal Mucosa Donor 29 rectum
14 chr20:16379000-16392800 Strong transcription Rectal Mucosa Donor 31 rectum
15 chr20:16379200-16395800 Weak transcription NHDF-Ad bronchial
16 chr20:16381400-16391400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr20:16381400-16399200 Weak transcription HMEC breast
18 chr20:16384000-16432600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr20:16384600-16391200 Weak transcription Psoas Muscle Psoas
20 chr20:16384800-16391400 Weak transcription Thymus Thymus
21 chr20:16385200-16404200 Weak transcription Primary T cells fromperipheralblood blood
22 chr20:16385400-16404200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr20:16385600-16391200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr20:16386000-16391400 Weak transcription Brain Hippocampus Middle brain
25 chr20:16386200-16390200 Weak transcription Small Intestine intestine
26 chr20:16386200-16404400 Weak transcription Rectal Smooth Muscle rectum
27 chr20:16386400-16398600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr20:16386400-16404200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr20:16386600-16391400 Weak transcription Brain Angular Gyrus brain
30 chr20:16386800-16391200 Weak transcription Primary B cells from peripheral blood blood
31 chr20:16386800-16391200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr20:16386800-16391400 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr20:16387000-16390000 Weak transcription Brain Inferior Temporal Lobe brain
34 chr20:16387000-16391000 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr20:16387000-16391200 Weak transcription Primary hematopoietic stem cells blood
36 chr20:16387000-16391400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr20:16387000-16391400 Weak transcription Brain Anterior Caudate brain
38 chr20:16387000-16391400 Weak transcription Brain Substantia Nigra brain
39 chr20:16387000-16391400 Weak transcription Fetal Muscle Trunk muscle
40 chr20:16387000-16393000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr20:16387000-16399000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr20:16387000-16399000 Weak transcription Liver Liver
43 chr20:16387000-16399000 Weak transcription Pancreas Pancrea
44 chr20:16387000-16399400 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr20:16387000-16403000 Weak transcription Fetal Stomach stomach
46 chr20:16387000-16404200 Weak transcription Gastric stomach
47 chr20:16387000-16406400 Weak transcription Primary T helper cells PMA-I stimulated --
48 chr20:16387200-16391200 Weak transcription Primary T cells from cord blood blood
49 chr20:16387200-16391200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr20:16387200-16391400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015