The 2.0 version of rSNPBase

Variant report

Variant rs538375530
Chromosome Location chr11:36025273-36025274
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:36015400-36026000 Weak transcription Monocytes-CD14+_RO01746 blood
2 chr11:36017600-36026000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr11:36018200-36025800 Weak transcription Fetal Intestine Small intestine
4 chr11:36019200-36029000 Weak transcription Placenta Amnion Placenta Amnion
5 chr11:36020000-36027800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr11:36020200-36026000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr11:36021400-36025400 Weak transcription Fetal Stomach stomach
8 chr11:36022200-36025400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
9 chr11:36022200-36025400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
10 chr11:36022600-36029000 Weak transcription A549 lung
11 chr11:36022600-36029800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr11:36023800-36025400 Enhancers Fetal Adrenal Gland Adrenal Gland
13 chr11:36024000-36028400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr11:36024200-36026000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr11:36024200-36026000 Weak transcription Pancreas Pancrea
16 chr11:36024200-36028000 Weak transcription Muscle Satellite Cultured Cells --
17 chr11:36024200-36028000 Weak transcription Ovary ovary
18 chr11:36024200-36030800 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr11:36024400-36025800 Weak transcription H1 Cell Line embryonic stem cell
20 chr11:36024400-36026000 Weak transcription Fetal Muscle Trunk muscle
21 chr11:36024400-36026000 Weak transcription Spleen Spleen
22 chr11:36024400-36030200 Weak transcription HSMM muscle
23 chr11:36024400-36031600 Weak transcription Psoas Muscle Psoas
24 chr11:36024400-36035600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr11:36024600-36025600 Strong transcription Cortex derived primary cultured neurospheres brain
26 chr11:36024600-36025600 Enhancers HSMMtube muscle
27 chr11:36024800-36025400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr11:36024800-36025800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr11:36024800-36025800 Weak transcription Brain Substantia Nigra brain
30 chr11:36024800-36026000 Weak transcription Fetal Lung lung
31 chr11:36024800-36027400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr11:36025000-36026000 Weak transcription Brain Hippocampus Middle brain
33 chr11:36025000-36028000 Weak transcription HUVEC blood vessel
34 chr11:36025000-36028800 Weak transcription Fetal Kidney kidney
35 chr11:36025200-36025800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr11:36025200-36025800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr11:36025200-36025800 Weak transcription Fetal Muscle Leg muscle
38 chr11:36025200-36026000 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr11:36025200-36026800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr11:36025200-36027000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015