Variant report

Variant	rs538394122
Chromosome Location	chr21:14345604-14345605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586984	chr21:14338286-14432856	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1809537	chr21:14338286-14497151	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv11295	chr21:14338455-14368624	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv3367259	chr21:14339247-14349344	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3329962	chr21:14342320-14347695	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3335863	chr21:14342797-14360444	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	esv3350799	chr21:14343210-14345872	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv19489	chr21:14343414-14351683	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv3417672	chr21:14343968-14346460	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3345901	chr21:14344359-14350923	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
11	esv3366306	chr21:14344738-14347898	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3412802	chr21:14344744-14345872	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3439928	chr21:14344787-14350448	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
14	esv3386441	chr21:14344807-14350180	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
15	esv3334037	chr21:14344821-14346460	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
16	esv3455540	chr21:14345336-14346076	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
17	esv3455541	chr21:14345336-14346076	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv3510877	chr21:14345403-14346035	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3510878	chr21:14345403-14346035	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
20	esv3879	chr21:14345420-14345785	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:14338200-14346000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:14338200-14346000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chr21:14338200-14351800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr21:14338200-14363600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr21:14338400-14347000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr21:14338800-14350800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr21:14339400-14359000	Weak transcription	K562	blood
8	chr21:14340600-14345800	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr21:14344400-14345800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr21:14344400-14345800	ZNF genes & repeats	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links