Variant report

Variant	rs538405242
Chromosome Location	chr3:151299517-151299518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	esv3437884	chr3:151287303-151309272	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv4064	chr3:151298187-151370986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151295000-151302400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:151295600-151302000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:151296600-151303400	Enhancers	Dnd41	blood
4	chr3:151297800-151299600	Enhancers	Adipose Nuclei	Adipose
5	chr3:151297800-151299600	Enhancers	Osteobl	bone
6	chr3:151298000-151302400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:151298600-151302400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:151298600-151302400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:151299000-151302200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:151299200-151299600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:151299400-151299600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:151299400-151307000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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