Variant report

Variant	rs538421090
Chromosome Location	chr12:60755643-60755644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:60755566-60755756	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60755627..60757547-chr12:60757638..60760144,2	K562	blood:

Variant related genes	Relation type
ENSG00000251822	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047466	chr12:60702221-61521156	Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2762983	chr12:60735475-60767081	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3500240	chr12:60752085-60759033	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3500239	chr12:60752535-60758933	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv8977	chr12:60752953-60758579	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3487753	chr12:60753082-60758015	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3500245	chr12:60753104-60758015	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3487764	chr12:60753106-60757953	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv437755	chr12:60753107-60757930	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3500247	chr12:60753108-60758005	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3487742	chr12:60753130-60757990	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3500243	chr12:60753131-60757946	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3487775	chr12:60753136-60757944	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3500244	chr12:60753158-60757952	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3500246	chr12:60753162-60757948	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv3500242	chr12:60753213-60757907	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3487786	chr12:60753217-60757905	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3500248	chr12:60753217-60757905	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv20278	chr12:60753340-60757908	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv3693123	chr12:60755248-60757479	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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