Variant report

Variant	rs538451791
Chromosome Location	chr4:100496264-100496265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1833664	chr4:100495571-100504985	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1996400	chr4:100496262-100496264	Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100495000-100496400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:100495400-100497000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:100495600-100497000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:100495600-100497200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:100495600-100500400	Active TSS	Fetal Intestine Large	intestine
6	chr4:100495800-100496400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:100495800-100496400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:100495800-100496400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr4:100495800-100496400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:100495800-100496400	Enhancers	Primary B cells from cord blood	blood
11	chr4:100495800-100496400	Active TSS	Brain Anterior Caudate	brain
12	chr4:100495800-100496400	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr4:100495800-100496600	Enhancers	Primary B cells from peripheral blood	blood
14	chr4:100495800-100496600	Active TSS	Aorta	Aorta
15	chr4:100495800-100496600	Active TSS	Ovary	ovary
16	chr4:100495800-100496600	Flanking Active TSS	GM12878-XiMat	blood
17	chr4:100495800-100500400	Active TSS	Fetal Intestine Small	intestine
18	chr4:100495800-100500800	Active TSS	Duodenum Mucosa	Duodenum
19	chr4:100496000-100496400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr4:100496000-100496400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr4:100496000-100496400	Active TSS	Brain Substantia Nigra	brain
22	chr4:100496000-100496600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr4:100496000-100497000	Active TSS	Fetal Kidney	kidney
24	chr4:100496000-100497200	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr4:100496000-100497600	Active TSS	HepG2	liver
26	chr4:100496200-100496400	Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr4:100496200-100497000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:100496200-100497200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:100496200-100498200	Active TSS	Liver	Liver

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