Variant report

Variant	rs538539130
Chromosome Location	chr17:37974774-37974775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37970400-37978600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr17:37970600-37977600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr17:37971000-37974800	Weak transcription	Fetal Thymus	thymus
4	chr17:37972600-37974800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr17:37973200-37975000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:37973200-37976800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:37973200-37978200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr17:37973400-37975200	Enhancers	Primary T cells from cord blood	blood
9	chr17:37973400-37978400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:37973600-37976600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr17:37973800-37977600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr17:37973800-37978400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr17:37973800-37979200	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr17:37974000-37977800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr17:37974200-37975800	Enhancers	Thymus	Thymus
16	chr17:37974200-37976600	Enhancers	Dnd41	blood
17	chr17:37974600-37974800	Genic enhancers	Primary B cells from cord blood	blood
18	chr17:37974600-37976000	Enhancers	HMEC	breast
19	chr17:37974600-37976400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
20	chr17:37974600-37976400	Enhancers	NHEK	skin
21	chr17:37974600-37977000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr17:37974600-37978400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr17:37974600-37978400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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