The 2.0 version of rSNPBase

Variant report

Variant rs538550354
Chromosome Location chr12:120259694-120259695
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:120209400-120293600 Weak transcription Primary T cells from cord blood blood
2 chr12:120223000-120314400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr12:120241600-120276600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr12:120242600-120259800 Weak transcription NH-A brain
5 chr12:120242600-120260200 Weak transcription HUVEC blood vessel
6 chr12:120242600-120276600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr12:120242600-120276800 Weak transcription H9 Cell Line embryonic stem cell
8 chr12:120242600-120279000 Weak transcription Fetal Intestine Small intestine
9 chr12:120242600-120279400 Weak transcription Fetal Intestine Large intestine
10 chr12:120242600-120293800 Weak transcription Fetal Adrenal Gland Adrenal Gland
11 chr12:120242600-120294400 Weak transcription Fetal Kidney kidney
12 chr12:120242800-120287800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr12:120243200-120288200 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr12:120245200-120273000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr12:120245200-120276400 Weak transcription Fetal Muscle Leg muscle
16 chr12:120245600-120285200 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr12:120247000-120274600 Weak transcription HMEC breast
18 chr12:120247200-120259800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr12:120247200-120274400 Weak transcription NHEK skin
20 chr12:120247200-120285800 Weak transcription NHLF lung
21 chr12:120247400-120264400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr12:120247400-120285800 Weak transcription Muscle Satellite Cultured Cells --
23 chr12:120247800-120272800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr12:120252000-120261600 Weak transcription Duodenum Mucosa Duodenum
25 chr12:120253400-120266000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr12:120253600-120266800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr12:120253800-120259800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr12:120253800-120272400 Strong transcription HUES64 Cell Line embryonic stem cell
29 chr12:120254000-120261200 Strong transcription Primary monocytes fromperipheralblood blood
30 chr12:120254800-120286400 Weak transcription Fetal Muscle Trunk muscle
31 chr12:120254800-120314600 Weak transcription ES-WA7 Cell Line embryonic stem cell
32 chr12:120255800-120264600 Weak transcription Osteobl bone
33 chr12:120256000-120261200 Strong transcription Primary hematopoietic stem cells short term culture blood
34 chr12:120256400-120263000 Weak transcription Hela-S3 cervix
35 chr12:120256600-120268400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr12:120256600-120304000 Weak transcription Fetal Heart heart
37 chr12:120256800-120260000 Weak transcription HSMM muscle
38 chr12:120257200-120259800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr12:120257200-120260000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr12:120257200-120260200 Weak transcription Primary hematopoietic stem cells blood
41 chr12:120257200-120265800 Strong transcription iPS-20b Cell Line embryonic stem cell
42 chr12:120257200-120270400 Weak transcription Fetal Stomach stomach
43 chr12:120257400-120259800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr12:120257400-120263000 Weak transcription GM12878-XiMat blood
45 chr12:120257400-120277800 Weak transcription Fetal Brain Female brain
46 chr12:120257800-120260400 Weak transcription H1 Cell Line embryonic stem cell
47 chr12:120257800-120263000 Weak transcription Thymus Thymus
48 chr12:120257800-120270400 Weak transcription HepG2 liver
49 chr12:120257800-120275000 Weak transcription K562 blood
50 chr12:120258000-120259800 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015