Variant report

Variant	rs538550360
Chromosome Location	chr3:133949768-133949769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133948864..133950989-chr3:133968171..133969773,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163785	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv1794616	chr3:133949713-133973731	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
4	esv1798974	chr3:133949713-133973731	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	esv1802675	chr3:133949713-133973731	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	esv1815799	chr3:133949713-133973731	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	esv1819695	chr3:133949713-133973731	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
8	esv1822126	chr3:133949713-133973731	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
9	esv1839030	chr3:133949713-133973731	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
2	chr3:133895000-133950000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:133895000-133950200	Weak transcription	Gastric	stomach
4	chr3:133919000-133950600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133920800-133950200	Weak transcription	Aorta	Aorta
6	chr3:133920800-133950200	Weak transcription	Spleen	Spleen
7	chr3:133920800-133950600	Weak transcription	Hela-S3	cervix
8	chr3:133930000-133950000	Weak transcription	NHDF-Ad	bronchial
9	chr3:133930000-133950400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:133930000-133954600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:133930200-133950000	Weak transcription	HSMM	muscle
12	chr3:133930200-133950200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:133930200-133950600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:133930200-133955000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:133930200-133968000	Weak transcription	Fetal Kidney	kidney
16	chr3:133930400-133950200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:133930600-133957800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:133931400-133950200	Weak transcription	Dnd41	blood
19	chr3:133932400-133951000	Weak transcription	NHLF	lung
20	chr3:133933600-133950000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:133934600-133950400	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:133935400-133954600	Weak transcription	HUVEC	blood vessel
23	chr3:133938400-133950000	Weak transcription	Primary T cells from cord blood	blood
24	chr3:133938400-133950000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:133938800-133955200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:133939000-133949800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:133939000-133950000	Weak transcription	HSMMtube	muscle
28	chr3:133941000-133950200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:133941000-133954600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:133941000-133954800	Weak transcription	Fetal Intestine Large	intestine
31	chr3:133941000-133961600	Weak transcription	Esophagus	oesophagus
32	chr3:133941200-133950200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:133941200-133950200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:133941200-133950400	Weak transcription	Placenta	Placenta
35	chr3:133941400-133950000	Weak transcription	Thymus	Thymus
36	chr3:133941400-133950800	Weak transcription	HepG2	liver
37	chr3:133941400-133957200	Weak transcription	Fetal Stomach	stomach
38	chr3:133941400-133967400	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:133942000-133951000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:133942000-133952600	Weak transcription	Brain Angular Gyrus	brain
41	chr3:133943000-133950800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:133943200-133954600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:133943400-133950200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:133943400-133950200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr3:133943400-133950200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:133943400-133950200	Weak transcription	Colon Smooth Muscle	Colon
47	chr3:133943400-133950400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr3:133943400-133950400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr3:133943400-133961800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr3:133943600-133950200	Weak transcription	Primary T cells fromperipheralblood	blood

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