Variant report

Variant	rs538567785
Chromosome Location	chr9:101025758-101025759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101017313..101019971-chr9:101024791..101026920,2	MCF-7	breast:
2	chr9:100930862..100931822-chr9:101025607..101026459,2	K562	blood:
3	chr9:100836404..100837181-chr9:101025639..101026636,4	K562	blood:
4	chr9:100835138..100837657-chr9:101023286..101025841,2	MCF-7	breast:
5	chr9:100967687..100968926-chr9:101025676..101026669,6	K562	blood:
6	chr9:100954115..100956214-chr9:101024702..101026397,2	MCF-7	breast:
7	chr9:101010177..101013807-chr9:101023006..101027119,4	K562	blood:
8	chr9:100684316..100685157-chr9:101025719..101026655,2	NB4	blood:
9	chr9:100944487..100947115-chr9:101025463..101028083,2	MCF-7	breast:
10	chr9:100836667..100837319-chr9:101025705..101026458,2	MCF-7	breast:
11	chr9:100966646..100969743-chr9:101023259..101026194,3	K562	blood:
12	chr9:101017245..101019908-chr9:101024974..101027737,3	MCF-7	breast:
13	chr9:100955096..100955755-chr9:101025700..101026542,2	MCF-7	breast:
14	chr9:100818347..100819097-chr9:101025427..101026319,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000106789	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101019600-101026200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:101019600-101027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:101023600-101026200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:101024000-101026400	Enhancers	HSMMtube	muscle
5	chr9:101024400-101025800	Enhancers	K562	blood
6	chr9:101024400-101026200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:101024400-101026200	Enhancers	HSMM	muscle
8	chr9:101024800-101027600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:101025200-101026000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:101025400-101026000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:101025400-101026200	Enhancers	Osteobl	bone
12	chr9:101025400-101028400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:101025600-101027000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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