Variant report

Variant	rs538570339
Chromosome Location	chr4:103391516-103391517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003490	chr4:103391483-103521772	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103390600-103391600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:103390600-103391800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr4:103390600-103391800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:103390600-103391800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr4:103390600-103391800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr4:103390600-103391800	Enhancers	HUVEC	blood vessel
7	chr4:103390800-103391800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr4:103391200-103391600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:103391200-103391800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:103391200-103392000	Enhancers	Primary T cells from cord blood	blood
11	chr4:103391200-103392600	Enhancers	Dnd41	blood
12	chr4:103391200-103393600	Weak transcription	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links