Variant report

Variant	rs538574232
Chromosome Location	chr1:166458647-166458648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:166449687..166451198-chr1:166457189..166459099,2	K562	blood:
2	chr1:166457611..166459186-chr1:166459770..166461312,2	K562	blood:
3	chr1:166447978..166448509-chr1:166458216..166458981,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv946484	chr1:166458528-166461650	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166455200-166458800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:166457000-166458800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:166457000-166458800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:166457000-166458800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr1:166457600-166458800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:166458000-166458800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:166458000-166458800	Weak transcription	Liver	Liver
8	chr1:166458000-166459200	Flanking Active TSS	K562	blood
9	chr1:166458000-166460000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:166458000-166460000	Flanking Active TSS	Dnd41	blood
11	chr1:166458000-166460000	Active TSS	GM12878-XiMat	blood
12	chr1:166458400-166458800	Enhancers	Primary T cells from cord blood	blood
13	chr1:166458400-166458800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:166458400-166458800	Enhancers	Adipose Nuclei	Adipose
15	chr1:166458400-166459000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr1:166458600-166458800	Enhancers	Primary B cells from cord blood	blood
17	chr1:166458600-166458800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr1:166458600-166458800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:166458600-166458800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:166458600-166458800	Active TSS	Duodenum Mucosa	Duodenum
21	chr1:166458600-166459000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr1:166458600-166459000	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr1:166458600-166459000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr1:166458600-166459000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr1:166458600-166459200	Flanking Active TSS	Primary B cells from peripheral blood	blood
26	chr1:166458600-166459200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr1:166458600-166459200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr1:166458600-166459200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr1:166458600-166459800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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