Variant report

Variant	rs538588413
Chromosome Location	chr12:105878867-105878868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105878812..105881754-chr12:106532109..106533760,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899502	chr12:105862964-105904525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3325324	chr12:105878622-105883020	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105863200-105884200	Weak transcription	Right Atrium	heart
2	chr12:105874400-105879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:105874400-105879000	Weak transcription	A549	lung
4	chr12:105874400-105893600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:105874600-105879200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:105875000-105879200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:105875400-105879000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:105875400-105904400	Weak transcription	Aorta	Aorta
9	chr12:105876200-105879000	Weak transcription	HSMM	muscle
10	chr12:105876400-105879600	Weak transcription	Fetal Muscle Leg	muscle
11	chr12:105876400-105880400	Weak transcription	Fetal Kidney	kidney
12	chr12:105876400-105881800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:105878000-105879000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:105878000-105879000	Weak transcription	Lung	lung
15	chr12:105878200-105879200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:105878200-105880800	Enhancers	Left Ventricle	heart
17	chr12:105878400-105881600	Enhancers	HUVEC	blood vessel
18	chr12:105878600-105880200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr12:105878800-105879200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr12:105878800-105879200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr12:105878800-105879200	Enhancers	NH-A	brain
22	chr12:105878800-105879600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:105878800-105879800	Enhancers	Spleen	Spleen
24	chr12:105878800-105879800	Enhancers	Hela-S3	cervix
25	chr12:105878800-105880000	Enhancers	Adipose Nuclei	Adipose
26	chr12:105878800-105880200	Enhancers	Placenta	Placenta
27	chr12:105878800-105880200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr12:105878800-105880600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr12:105878800-105880800	Enhancers	HSMMtube	muscle

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