Variant report

Variant	rs538590934
Chromosome Location	chr5:14925346-14925347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2755538	chr5:14814900-14927500	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv597261	chr5:14913369-14962587	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv881238	chr5:14917813-14950952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv881343	chr5:14917813-14956699	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv881445	chr5:14917813-14960920	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv881333	chr5:14924458-14962587	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14916000-14925400	Weak transcription	HSMM	muscle
2	chr5:14916600-14929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:14919000-14926000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:14919200-14925400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:14920000-14926200	Weak transcription	Placenta	Placenta
6	chr5:14920600-14925400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:14920800-14925400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:14921200-14925400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:14923000-14926000	Weak transcription	Lung	lung
10	chr5:14923000-14926000	Weak transcription	Right Atrium	heart
11	chr5:14923000-14926200	Weak transcription	Left Ventricle	heart
12	chr5:14923000-14926200	Weak transcription	Right Ventricle	heart
13	chr5:14924000-14929400	Weak transcription	Fetal Heart	heart
14	chr5:14924600-14925400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:14924600-14925600	Enhancers	Dnd41	blood
16	chr5:14924600-14927200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr5:14924800-14925600	Enhancers	Primary T cells from cord blood	blood
18	chr5:14924800-14926000	Enhancers	Osteobl	bone
19	chr5:14924800-14926800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr5:14924800-14927200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:14924800-14927400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:14924800-14927400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:14925000-14925600	Enhancers	NH-A	brain
24	chr5:14925000-14926000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:14925000-14926000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr5:14925000-14926400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:14925000-14926400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr5:14925000-14927200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr5:14925200-14925600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr5:14925200-14926600	Enhancers	HUVEC	blood vessel
31	chr5:14925200-14926800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr5:14925200-14927200	Enhancers	HMEC	breast
33	chr5:14925200-14927400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links