Variant report

Variant	rs538612892
Chromosome Location	chr6:30775599-30775600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30723023..30725231-chr6:30773189..30775905,2	MCF-7	breast:
2	chr6:30765847..30772235-chr6:30775518..30781372,10	K562	blood:
3	chr6:30774980..30776626-chr6:30874268..30876339,2	K562	blood:
4	chr6:30706744..30716171-chr6:30774931..30783832,28	MCF-7	breast:
5	chr6:30716968..30722090-chr6:30774929..30783584,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137331	Chromatin interaction
ENSG00000213780	Chromatin interaction
ENSG00000137411	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000263608	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000264731	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
5	esv2758041	chr6:30644693-30816319	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
6	esv2759413	chr6:30644693-30816319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
7	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
8	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
9	nsv884105	chr6:30775579-30786676	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv884106	chr6:30775579-30787323	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30761600-30781000	Weak transcription	Small Intestine	intestine
2	chr6:30767200-30781200	Weak transcription	Gastric	stomach
3	chr6:30771200-30777400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:30772200-30777200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:30772400-30777000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:30772600-30776600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:30772600-30777600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:30772600-30778000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:30772600-30778400	Weak transcription	Fetal Thymus	thymus
10	chr6:30772800-30776000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:30772800-30776400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:30772800-30778200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:30773000-30776600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:30773000-30778600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:30773200-30775800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:30773400-30778200	Weak transcription	Primary T cells from cord blood	blood
17	chr6:30773800-30776400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:30774600-30775600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:30774600-30777200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:30774600-30777200	Weak transcription	K562	blood
21	chr6:30774800-30779800	Weak transcription	HepG2	liver
22	chr6:30775000-30778400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:30775000-30778600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links