Variant report

Variant	rs538637698
Chromosome Location	chr7:5111441-5111442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:5111361-5112173	ECC-1	luminal epithelium:	n/a	chr7:5111952-5111962
2	POLR2A	chr7:5111160-5111773	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr7:5111244-5111627	U87	brain:	n/a	n/a
4	POLR2A	chr7:5111177-5111851	PANC-1	pancreas:	n/a	n/a
5	POLR2A	chr7:5111377-5111827	HL-60	blood:	n/a	n/a
6	POLR2A	chr7:5111216-5111627	U87	brain:	n/a	n/a
7	POLR2A	chr7:5111405-5111708	GM12878	blood:	n/a	n/a
8	POLR2A	chr7:5110755-5112018	K562	blood:	n/a	n/a
9	POLR2A	chr7:5111276-5112004	U87	brain:	n/a	n/a
10	POLR2A	chr7:5111368-5111809	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr7:5111161-5111979	SK-N-MC	brain:	n/a	n/a
12	POLR2A	chr7:5111341-5112058	GM12878	blood:	n/a	n/a
13	POLR2A	chr7:5111391-5112212	HepG2	liver:	n/a	n/a
14	FOSL2	chr7:5111226-5111813	HepG2	liver:	n/a	chr7:5111602-5111610
15	POLR2A	chr7:5111151-5111739	HL-60	blood:	n/a	n/a
16	MAX	chr7:5111400-5111908	K562	blood:	n/a	n/a
17	POLR2A	chr7:5111357-5111995	ECC-1	luminal epithelium:	n/a	n/a
18	POLR2A	chr7:5111068-5111843	K562	blood:	n/a	n/a
19	POLR2A	chr7:5111362-5112071	GM12878	blood:	n/a	n/a
20	POLR2A	chr7:5111380-5111615	SK-N-SH	brain:	n/a	n/a
21	POLR2A	chr7:5111238-5111835	PANC-1	pancreas:	n/a	n/a
22	POLR2A	chr7:5111366-5111804	GM12891	blood:	n/a	n/a
23	POLR2A	chr7:5111219-5111913	GM12878	blood:	n/a	n/a
24	POLR2A	chr7:5111322-5111727	HepG2	liver:	n/a	n/a
25	POLR2A	chr7:5111335-5111963	U87	brain:	n/a	n/a
26	POLR2A	chr7:5110740-5111842	MCF-7	breast:	n/a	n/a
27	POLR2A	chr7:5111136-5111683	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr7:5110963-5111670	PFSK-1	brain:	n/a	n/a
29	HMGN3	chr7:5111428-5111933	K562	blood:	n/a	n/a
30	POLR2A	chr7:5111415-5111867	K562	blood:	n/a	n/a
31	POLR2A	chr7:5111273-5112027	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
RBAKDN	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv1022678	chr7:4810626-5113387	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv538705	chr7:4810626-5113387	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
8	nsv1019120	chr7:4929653-5138409	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv917078	chr7:4962123-5151633	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1029430	chr7:5053887-5223583	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	nsv1025644	chr7:5066181-5114089	Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv1032880	chr7:5066181-5205932	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1030384	chr7:5066181-5210555	Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
15	nsv538709	chr7:5101766-5152727	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
16	nsv1031007	chr7:5101766-5262695	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	esv3475545	chr7:5111165-5111894	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3526810	chr7:5111215-5111897	Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3526809	chr7:5111231-5111862	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3475543	chr7:5111235-5111888	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3526808	chr7:5111236-5111846	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv3475544	chr7:5111236-5111869	Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv3526812	chr7:5111265-5111831	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv3475541	chr7:5111302-5111786	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	esv3526811	chr7:5111312-5111789	Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv3475546	chr7:5111316-5111787	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv3526813	chr7:5111316-5111787	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5095200-5111600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
2	chr7:5106800-5111800	Weak transcription	HepG2	liver
3	chr7:5107200-5111600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
4	chr7:5108600-5117400	Weak transcription	Dnd41	blood
5	chr7:5110400-5111600	Weak transcription	Ovary	ovary
6	chr7:5110800-5112000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
7	chr7:5111000-5112000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
8	chr7:5111200-5111600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:5111200-5111800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
10	chr7:5111200-5113600	ZNF genes & repeats	Spleen	Spleen
11	chr7:5111400-5111600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
12	chr7:5111400-5111600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr7:5111400-5111600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:5111400-5111600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
15	chr7:5111400-5111600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr7:5111400-5111600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:5111400-5111600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:5111400-5111600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:5111400-5111600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:5111400-5111600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:5111400-5111600	Active TSS	Brain Anterior Caudate	brain
22	chr7:5111400-5111600	Enhancers	Brain Hippocampus Middle	brain
23	chr7:5111400-5111600	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:5111400-5111600	Enhancers	Right Atrium	heart
25	chr7:5111400-5111600	Enhancers	Right Ventricle	heart
26	chr7:5111400-5111600	Flanking Active TSS	K562	blood
27	chr7:5111400-5111600	Enhancers	NHDF-Ad	bronchial
28	chr7:5111400-5111800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
29	chr7:5111400-5111800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr7:5111400-5111800	Bivalent Enhancer	Brain Germinal Matrix	brain
31	chr7:5111400-5111800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
32	chr7:5111400-5111800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr7:5111400-5111800	Enhancers	Left Ventricle	heart
34	chr7:5111400-5112000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:5111400-5112000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:5111400-5112000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr7:5111400-5112000	ZNF genes & repeats	Adipose Nuclei	Adipose
38	chr7:5111400-5112000	Bivalent Enhancer	Placenta	Placenta
39	chr7:5111400-5112000	ZNF genes & repeats	Lung	lung
40	chr7:5111400-5112000	Enhancers	Pancreas	Pancrea
41	chr7:5111400-5112200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
42	chr7:5111400-5112200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:5111400-5112600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:5111400-5112600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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