Variant report

Variant	rs538653166
Chromosome Location	chr10:4054988-4054989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407996	chr10:4054377-4056925	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4043400-4055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4047400-4055800	Weak transcription	Psoas Muscle	Psoas
3	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:4051800-4055800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:4052200-4056000	Weak transcription	Fetal Heart	heart
6	chr10:4052600-4056000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:4054000-4055000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:4054600-4056000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:4054800-4055000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:4054800-4055200	Enhancers	Primary T cells from cord blood	blood
11	chr10:4054800-4055200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:4054800-4055400	Enhancers	Dnd41	blood
13	chr10:4054800-4056000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:4054800-4056400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links