Variant report

Variant	rs538670699
Chromosome Location	chr4:151091186-151091187
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151084738..151086505-chr4:151089545..151091650,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3389431	chr4:151091125-151091589	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:151071400-151091400	Weak transcription	Osteobl	bone
3	chr4:151071600-151091600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:151074400-151091800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:151074400-151094200	Weak transcription	NH-A	brain
6	chr4:151074600-151094000	Weak transcription	HSMMtube	muscle
7	chr4:151074600-151094600	Weak transcription	HSMM	muscle
8	chr4:151081400-151094200	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:151081400-151096600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:151085400-151094200	Enhancers	Brain Germinal Matrix	brain
11	chr4:151085400-151097400	Weak transcription	Ovary	ovary
12	chr4:151086600-151091800	Weak transcription	NHDF-Ad	bronchial
13	chr4:151087200-151093000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:151087200-151093800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:151087200-151094600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:151088600-151091400	Weak transcription	A549	lung
17	chr4:151088600-151094000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:151088600-151094000	Weak transcription	Fetal Brain Female	brain
19	chr4:151088600-151094000	Weak transcription	Fetal Stomach	stomach
20	chr4:151088600-151094000	Weak transcription	HUVEC	blood vessel
21	chr4:151088600-151094400	Weak transcription	Right Atrium	heart
22	chr4:151088800-151092600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:151088800-151094000	Weak transcription	Brain Angular Gyrus	brain
24	chr4:151088800-151094000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:151088800-151094200	Weak transcription	Fetal Brain Male	brain
26	chr4:151088800-151094200	Weak transcription	Fetal Lung	lung
27	chr4:151088800-151094200	Weak transcription	Left Ventricle	heart
28	chr4:151088800-151094200	Weak transcription	Right Ventricle	heart
29	chr4:151089000-151091600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:151089000-151094000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr4:151089000-151094200	Weak transcription	Brain Hippocampus Middle	brain
32	chr4:151089000-151094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:151089000-151094200	Weak transcription	Lung	lung
34	chr4:151089200-151094200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:151089200-151097000	Weak transcription	Aorta	Aorta
36	chr4:151089800-151094000	Weak transcription	Fetal Heart	heart
37	chr4:151090600-151094000	Weak transcription	Brain Anterior Caudate	brain
38	chr4:151090600-151094200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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