Variant report

Variant	rs538682075
Chromosome Location	chr9:26892398-26892399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:568)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:568 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZEB1	chr9:26892135-26892936	GM12878	blood:	n/a	n/a
2	CTCF	chr9:26892245-26892526	A549	lung:	n/a	n/a
3	GABPA	chr9:26892307-26892510	Hela-S3	cervix:	n/a	n/a
4	CTCF	chr9:26892360-26892510	GM12867	blood:	n/a	n/a
5	MYC	chr9:26891502-26893054	MCF10A-Er-Src	breast:	n/a	chr9:26892866-26892876
6	MAX	chr9:26892210-26893024	A549	lung:	n/a	chr9:26892866-26892876
7	MAX	chr9:26892300-26892528	K562	blood:	n/a	n/a
8	RAD21	chr9:26892309-26892458	K562	blood:	n/a	n/a
9	POLR2A	chr9:26892109-26893150	HUVEC	blood vessel:	n/a	n/a
10	USF2	chr9:26892207-26892979	GM12878	blood:	n/a	n/a
11	TAF1	chr9:26892210-26892459	GM12878	blood:	n/a	n/a
12	REST	chr9:26892305-26892425	K562	blood:	n/a	n/a
13	CTCF	chr9:26892302-26892500	ProgFib	skin:	n/a	n/a
14	SIN3AK20	chr9:26892069-26893213	MCF-7	breast:	n/a	n/a
15	POLR2A	chr9:26892134-26893327	PFSK-1	brain:	n/a	n/a
16	STAT1	chr9:26892220-26893039	GM12878	blood:	n/a	n/a
17	CTCF	chr9:26892280-26892430	NHDF-neo	bronchial:	n/a	n/a
18	CHD1	chr9:26891432-26893429	H1-hESC	embryonic stem cell:	n/a	n/a
19	CREB1	chr9:26892169-26893102	GM12878	blood:	n/a	n/a
20	NRF1	chr9:26892350-26892965	GM12878	blood:	n/a	n/a
21	CTCF	chr9:26892249-26892522	GM19240	blood:	n/a	n/a
22	EGR1	chr9:26892190-26893165	HCT-116	colon:	n/a	chr9:26892820-26892829
23	GABPA	chr9:26892142-26893147	MCF-7	breast:	n/a	n/a
24	POLR2A	chr9:26892219-26893086	Gliobla	brain:	n/a	n/a
25	FOXA2	chr9:26892354-26893100	A549	lung:	n/a	n/a
26	CTCF	chr9:26892295-26892493	Hela-S3	cervix:	n/a	n/a
27	MXI1	chr9:26891954-26893269	GM12878	blood:	n/a	n/a
28	MYC	chr9:26892268-26893103	MCF10A-Er-Src	breast:	n/a	chr9:26892866-26892876
29	POLR2A	chr9:26892160-26893103	ECC-1	luminal epithelium:	n/a	n/a
30	MYC	chr9:26892308-26892621	MCF-7	breast:	n/a	n/a
31	MAX	chr9:26892142-26893105	ECC-1	luminal epithelium:	n/a	chr9:26892866-26892876
32	POLR2A	chr9:26891907-26893486	GM12892	blood:	n/a	n/a
33	CTCF	chr9:26892300-26892450	AG04450	lung:	n/a	n/a
34	TBP	chr9:26890977-26893272	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr9:26892162-26893069	GM12891	blood:	n/a	n/a
36	CTCF	chr9:26892246-26892558	MCF-7	breast:	n/a	n/a
37	SIN3AK20	chr9:26892203-26892978	H1-hESC	embryonic stem cell:	n/a	n/a
38	MAFK	chr9:26892106-26893224	K562	blood:	n/a	n/a
39	TCF12	chr9:26892280-26892627	GM12878	blood:	n/a	n/a
40	CTCF	chr9:26892300-26892450	GM12872	blood:	n/a	n/a
41	MAX	chr9:26892158-26893075	MCF-7	breast:	n/a	chr9:26892866-26892876
42	CREB1	chr9:26891666-26893298	GM12878	blood:	n/a	n/a
43	TAF1	chr9:26892137-26893098	ECC-1	luminal epithelium:	n/a	n/a
44	MXI1	chr9:26891949-26893264	IMR90	lung:	n/a	n/a
45	POLR2A	chr9:26892148-26893155	MCF-7	breast:	n/a	n/a
46	CTCF	chr9:26892340-26892490	GM12871	blood:	n/a	n/a
47	POLR2A	chr9:26891794-26893176	GM12878	blood:	n/a	n/a
48	POLR2A	chr9:26891697-26893623	Raji	blood:	n/a	n/a
49	POLR2A	chr9:26892198-26892984	A549	lung:	n/a	n/a
50	UBTF	chr9:26891646-26893102	K562	blood:	n/a	n/a

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:26891080..26895841-chr9:26945501..26948974,8	K562	blood:
2	chr9:26891080..26894676-chr9:26945695..26949113,9	K562	blood:
3	chr9:26886338..26888156-chr9:26890310..26892766,2	MCF-7	breast:
4	chr9:26891289..26894164-chr9:26921199..26924471,3	MCF-7	breast:
5	chr9:26890425..26894629-chr9:26953159..26958312,6	K562	blood:
6	chr9:26891902..26893962-chr9:26955453..26958235,3	MCF-7	breast:
7	chr9:26892381..26894407-chr9:26894414..26897617,3	MCF-7	breast:
8	chr9:26891939..26894308-chr9:26895080..26897868,2	K562	blood:
9	chr9:26890972..26893985-chr9:26945405..26948624,3	MCF-7	breast:
10	chr9:26886474..26888568-chr9:26890678..26892880,3	MCF-7	breast:
11	chr12:39299074..39299955-chr9:26892301..26892993,2	Hela-S3	cervix:
12	chr9:26890485..26893190-chr9:26945159..26948755,7	MCF-7	breast:
13	chr9:26889862..26894629-chr9:26953159..26958871,9	K562	blood:
14	chr9:26886311..26888299-chr9:26891061..26892871,2	K562	blood:
15	chr1:45195949..45196852-chr9:26892311..26892847,2	HCT-116	colon:

No data

Variant related genes	Relation type
RN7SL100P	TF binding region
CAAP1	TF binding region
ENSG00000096872	Chromatin interaction
ENSG00000120159	Chromatin interaction
ENSG00000137055	Chromatin interaction
ENSG00000234676	Chromatin interaction
ENSG00000139117	Chromatin interaction
ENSG00000200169	Chromatin interaction
ENSG00000240306	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3440051	chr9:26892073-26892416	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26888200-26893600	Active TSS	K562	blood
2	chr9:26890000-26893000	Active TSS	Hela-S3	cervix
3	chr9:26890200-26893400	Active TSS	Psoas Muscle	Psoas
4	chr9:26890200-26893600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:26890400-26894400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr9:26890600-26893000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:26890600-26893200	Active TSS	Fetal Intestine Large	intestine
8	chr9:26890600-26893200	Active TSS	A549	lung
9	chr9:26890600-26893600	Active TSS	Fetal Intestine Small	intestine
10	chr9:26890600-26893600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr9:26890800-26892400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:26890800-26893000	Active TSS	Fetal Kidney	kidney
13	chr9:26890800-26893000	Active TSS	GM12878-XiMat	blood
14	chr9:26890800-26893200	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:26890800-26893200	Active TSS	Colonic Mucosa	Colon
16	chr9:26890800-26893200	Active TSS	Duodenum Mucosa	Duodenum
17	chr9:26890800-26893600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:26890800-26893600	Active TSS	HSMM	muscle
19	chr9:26891000-26892400	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr9:26891000-26893000	Active TSS	Muscle Satellite Cultured Cells	--
21	chr9:26891000-26893000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:26891000-26893200	Active TSS	Aorta	Aorta
23	chr9:26891000-26893200	Active TSS	Fetal Stomach	stomach
24	chr9:26891000-26893200	Active TSS	Right Ventricle	heart
25	chr9:26891000-26893200	Active TSS	Thymus	Thymus
26	chr9:26891000-26893200	Active TSS	HSMMtube	muscle
27	chr9:26891000-26893400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr9:26891000-26893400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:26891000-26893400	Active TSS	Right Atrium	heart
30	chr9:26891000-26893600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:26891200-26892600	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr9:26891200-26893000	Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr9:26891200-26893000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:26891200-26893000	Active TSS	Dnd41	blood
35	chr9:26891200-26893000	Active TSS	HMEC	breast
36	chr9:26891200-26893000	Active TSS	NHDF-Ad	bronchial
37	chr9:26891200-26893000	Active TSS	NHEK	skin
38	chr9:26891200-26893200	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr9:26891200-26893200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr9:26891200-26893200	Active TSS	Fetal Thymus	thymus
41	chr9:26891200-26893200	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr9:26891200-26893400	Active TSS	H1 Cell Line	embryonic stem cell
43	chr9:26891200-26893400	Active TSS	Fetal Heart	heart
44	chr9:26891200-26893600	Active TSS	Brain Anterior Caudate	brain
45	chr9:26891200-26893600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:26891400-26892400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr9:26891400-26892400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:26891400-26892800	Active TSS	NH-A	brain
49	chr9:26891400-26893000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr9:26891400-26893000	Active TSS	HUES64 Cell Line	embryonic stem cell

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