Variant report

Variant	rs538682620
Chromosome Location	chr4:15776867-15776868
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15771423..15774001-chr4:15776022..15777670,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15767200-15779400	Weak transcription	Spleen	Spleen
2	chr4:15768200-15777200	Enhancers	Fetal Thymus	thymus
3	chr4:15769200-15778600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:15771200-15779400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:15772800-15778000	Flanking Active TSS	Dnd41	blood
6	chr4:15773600-15779200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:15774000-15779800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:15774400-15779400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:15774400-15779600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:15774400-15780000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:15774400-15780000	Weak transcription	Small Intestine	intestine
12	chr4:15774600-15779200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:15774600-15779600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:15774800-15779000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:15775200-15779200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:15775800-15777400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:15775800-15779000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:15776000-15777400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:15776000-15778600	Weak transcription	Thymus	Thymus
20	chr4:15776000-15779600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:15776200-15777400	Enhancers	A549	lung
22	chr4:15776200-15778600	Weak transcription	GM12878-XiMat	blood
23	chr4:15776200-15779000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:15776200-15779200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:15776200-15779400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:15776200-15780000	Weak transcription	Right Atrium	heart
27	chr4:15776600-15779600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:15776800-15777000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:15776800-15779200	Weak transcription	Primary T cells from cord blood	blood

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