Variant report

Variant	rs538684094
Chromosome Location	chr3:138087565-138087566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138081144..138083981-chr3:138086003..138087797,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv528349	chr3:138025396-138132393	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1796956	chr3:138051423-138122781	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1848610	chr3:138051423-138133412	Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1797142	chr3:138087467-138122781	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1845560	chr3:138087467-138133412	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138068800-138093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:138069200-138088200	Weak transcription	Fetal Lung	lung
3	chr3:138070000-138096600	Weak transcription	Fetal Brain Male	brain
4	chr3:138071200-138096600	Weak transcription	Aorta	Aorta
5	chr3:138074200-138095600	Enhancers	Fetal Heart	heart
6	chr3:138074800-138089800	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:138075000-138090000	Enhancers	Brain Anterior Caudate	brain
8	chr3:138075600-138089400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:138076000-138108200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:138077800-138091600	Enhancers	Right Ventricle	heart
11	chr3:138078600-138100600	Weak transcription	NH-A	brain
12	chr3:138079600-138095600	Weak transcription	Fetal Brain Female	brain
13	chr3:138080200-138096400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:138080600-138092000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:138081000-138088400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:138081600-138091000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:138081600-138108200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:138082200-138088200	Genic enhancers	HSMMtube	muscle
19	chr3:138082400-138088800	Enhancers	Spleen	Spleen
20	chr3:138082400-138089400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr3:138082800-138088400	Genic enhancers	HSMM	muscle
22	chr3:138082800-138089400	Enhancers	Brain Hippocampus Middle	brain
23	chr3:138083000-138100400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:138083200-138091800	Enhancers	Adipose Nuclei	Adipose
25	chr3:138083200-138091800	Enhancers	Left Ventricle	heart
26	chr3:138083200-138100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:138083400-138090400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:138083800-138089400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr3:138084200-138089600	Enhancers	Lung	lung
30	chr3:138084400-138087600	Enhancers	Stomach Smooth Muscle	stomach
31	chr3:138084400-138089600	Enhancers	Brain Substantia Nigra	brain
32	chr3:138085200-138100000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:138085600-138089000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:138085600-138091000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr3:138085800-138096200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:138086200-138089400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr3:138086200-138100400	Weak transcription	HepG2	liver
38	chr3:138086600-138089400	Enhancers	Brain Angular Gyrus	brain
39	chr3:138086600-138089400	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr3:138086600-138091800	Weak transcription	Fetal Stomach	stomach
41	chr3:138086800-138100600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:138087000-138088000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr3:138087000-138088600	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr3:138087000-138092000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:138087000-138096000	Weak transcription	Placenta	Placenta
46	chr3:138087200-138087600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr3:138087200-138087600	Weak transcription	Psoas Muscle	Psoas
48	chr3:138087200-138087800	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr3:138087200-138088200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:138087200-138088200	Weak transcription	Fetal Muscle Leg	muscle

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