Variant report

Variant	rs538688411
Chromosome Location	chr9:95570023-95570024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr9:95569398-95572352	NT2-D1	testis:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:95570021-95570071	MCF10A-Er-Src	breast:	n/a
2	chr9:95570021-95570071	HL-60	blood:	n/a
3	chr9:95570021-95570071	HCM	heart:	n/a
4	chr9:95570021-95570071	NB4	blood:	n/a
5	chr9:95570021-95570071	K562	blood:	n/a
6	chr9:95570021-95570071	GM19239	blood:	n/a
7	chr9:95570021-95570071	A549	lung:	n/a
8	chr9:95570021-95570071	SKMC	muscle:	n/a
9	chr9:95570021-95570071	U87	brain:	n/a
10	chr9:95570021-95570071	Jurkat	blood:	n/a
11	chr9:95570021-95570071	MCF-7	breast:	n/a
12	chr9:95570021-95570071	HEK293	kidney:	embryo
13	chr9:95570021-95570071	ProgFib	skin:	n/a
14	chr9:95570021-95570071	Hela-S3	cervix:	n/a
15	chr9:95570021-95570071	AG04450	lung:	fetal
16	chr9:95570021-95570071	PFSK-1	brain:	n/a
17	chr9:95570021-95570071	GM12878	blood:	n/a
18	chr9:95570021-95570071	RPTEC	kidney:	n/a
19	chr9:95570021-95570071	SK-N-SH	brain:	n/a
20	chr9:95570021-95570071	LNCaP	prostate:	n/a
21	chr9:95570021-95570071	GM06990	blood:	n/a
22	chr9:95570021-95570071	SK-N-MC	brain:	n/a
23	chr9:95570021-95570071	Hepatocyte	liver:	n/a
24	chr9:95570021-95570071	HEEpiC	esophagus:	n/a
25	chr9:95570021-95570071	ECC-1	luminal epithelium:	n/a
26	chr9:95570021-95570071	HCT-116	colon:	n/a
27	chr9:95570021-95570071	NT2-D1	testis:	n/a
28	chr9:95570021-95570071	IMR90	lung:	fetal
29	chr9:95570021-95570071	PrEC	prostate:	n/a
30	chr9:95570021-95570071	HCPEpiC	choroid plexus:	n/a
31	chr9:95570021-95570071	AoSMC	blood vessel:	n/a
32	chr9:95570021-95570071	NHDF-neo	bronchial:	n/a
33	chr9:95570021-95570071	HNPCEpiC	eye:	n/a
34	chr9:95570021-95570071	HUVEC	blood vessel:	n/a
35	chr9:95570021-95570071	HCF	heart:	n/a
36	chr9:95570021-95570071	H1-hESC	embryonic stem cell:	embryo
37	chr9:95570021-95570071	T-47D	breast:	n/a
38	chr9:95570021-95570071	PANC-1	pancreas:	n/a
39	chr9:95570021-95570071	HRCEpiC	kidney:	n/a
40	chr9:95570021-95570071	HRPEpiC	eye:	n/a
41	chr9:95570021-95570071	NHBE	bronchial:	n/a
42	chr9:95570021-95570071	GM12892	blood:	n/a
43	chr9:95570021-95570071	HepG2	liver:	n/a
44	chr9:95570021-95570071	AG10803	skin:	n/a
45	chr9:95570021-95570071	HPAEpiC	pulmonary alveolar:	n/a
46	chr9:95570021-95570071	CMK	blood:	n/a
47	chr9:95570021-95570071	HRE	kidney:	n/a
48	chr9:95570021-95570071	GM12891	blood:	n/a
49	chr9:95570021-95570071	AG04449	skin:	fetal
50	chr9:95570021-95570071	AG09309	skin:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95431083..95433127-chr9:95569211..95571144,2	MCF-7	breast:
2	chr9:95431331..95434473-chr9:95569877..95572688,3	MCF-7	breast:

No data

Variant related genes	Relation type
ANKRD19P	TF binding region
ANKRD19P	CpG island
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv972420	chr9:95566045-95588965	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3373736	chr9:95569656-95572504	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95569200-95571200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
2	chr9:95569400-95570200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
3	chr9:95569400-95570200	Bivalent Enhancer	Fetal Heart	heart
4	chr9:95569400-95570600	Bivalent Enhancer	Primary B cells from cord blood	blood
5	chr9:95569400-95570600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:95569400-95571400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr9:95569400-95571600	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr9:95569400-95572400	Bivalent Enhancer	Fetal Brain Male	brain
9	chr9:95569400-95572400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr9:95569400-95572400	Bivalent Enhancer	Fetal Thymus	thymus
11	chr9:95569600-95570200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:95569600-95570200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
13	chr9:95569600-95570200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
14	chr9:95569600-95570200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
15	chr9:95569600-95570200	Bivalent Enhancer	Left Ventricle	heart
16	chr9:95569600-95570400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:95569600-95570400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:95569600-95570400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
19	chr9:95569600-95570600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:95569600-95570800	Bivalent Enhancer	Adipose Nuclei	Adipose
21	chr9:95569600-95570800	Enhancers	Right Atrium	heart
22	chr9:95569600-95571000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:95569600-95571200	Enhancers	Pancreas	Pancrea
24	chr9:95569600-95571400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
25	chr9:95569600-95572200	Bivalent Enhancer	Fetal Stomach	stomach
26	chr9:95569600-95572400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr9:95569600-95572400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
28	chr9:95569600-95572400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:95569600-95572400	Flanking Active TSS	Right Ventricle	heart
30	chr9:95569600-95572600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr9:95569800-95570200	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
32	chr9:95569800-95570200	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:95569800-95570200	Bivalent Enhancer	Psoas Muscle	Psoas
34	chr9:95569800-95570200	Bivalent Enhancer	A549	lung
35	chr9:95569800-95570400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:95569800-95570400	Bivalent Enhancer	Fetal Brain Female	brain
37	chr9:95569800-95570400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
38	chr9:95569800-95570600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
39	chr9:95569800-95570600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:95569800-95570800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
41	chr9:95569800-95571000	Enhancers	Lung	lung
42	chr9:95569800-95571200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
43	chr9:95569800-95571200	Enhancers	Gastric	stomach
44	chr9:95569800-95571600	Bivalent Enhancer	Placenta	Placenta
45	chr9:95569800-95572200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr9:95569800-95572400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:95569800-95572400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
48	chr9:95570000-95570200	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:95570000-95570200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:95570000-95570200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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