Variant report

Variant	rs538705977
Chromosome Location	chr6:142869553-142869554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142864400-142871800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:142864400-142872000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:142864400-142872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:142864400-142872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:142864400-142872200	Weak transcription	NHEK	skin
6	chr6:142866800-142869600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:142866800-142871800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:142867000-142869600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:142867000-142869800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:142867200-142869800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:142867200-142871800	Weak transcription	Fetal Thymus	thymus
12	chr6:142869400-142869800	Enhancers	HMEC	breast
13	chr6:142869400-142870600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:142869400-142872200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr6:142869400-142872400	Enhancers	Primary T cells from cord blood	blood
16	chr6:142869400-142872800	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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