Variant report

Variant	rs538708220
Chromosome Location	chr13:61552826-61552827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832624	chr13:61383648-61553974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3428346	chr13:61550376-61553324	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3426019	chr13:61550701-61553049	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv1792479	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv1798493	chr13:61551100-61553581	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv1801476	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv1801693	chr13:61551100-61553581	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv1795956	chr13:61551100-61553700	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv1796779	chr13:61551100-61553700	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv511514	chr13:61551100-61556688	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv900242	chr13:61551100-61600601	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv512321	chr13:61552749-61554301	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61552800-61564000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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