Variant report

Variant	rs538710765
Chromosome Location	chr4:124343879-124343880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:124319636..124321563-chr4:124343114..124346032,2	K562	blood:
2	chr4:124337335..124339594-chr4:124343242..124345116,2	K562	blood:
3	chr4:124340419..124342149-chr4:124342290..124345121,2	MCF-7	breast:
4	chr4:124343091..124345315-chr4:124349743..124351770,2	K562	blood:
5	chr4:124342626..124344275-chr4:124363247..124365507,2	K562	blood:

Variant related genes	Relation type
ENSG00000164056	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006945	chr4:124206328-124503863	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv537240	chr4:124206328-124503863	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv595379	chr4:124337522-124395024	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv516959	chr4:124342509-124344717	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124339200-124349200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:124340000-124344800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:124340600-124348200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:124341600-124344400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:124341800-124344400	Weak transcription	Small Intestine	intestine
6	chr4:124342600-124344000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:124343000-124344000	Enhancers	GM12878-XiMat	blood
8	chr4:124343000-124344400	Weak transcription	Fetal Thymus	thymus
9	chr4:124343200-124344800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:124343400-124345400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:124343600-124344000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:124343600-124344000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr4:124343600-124344200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:124343600-124345800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:124343800-124344000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr4:124343800-124344000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr4:124343800-124344200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr4:124343800-124344600	Weak transcription	K562	blood
19	chr4:124343800-124344800	Enhancers	Primary hematopoietic stem cells	blood
20	chr4:124343800-124344800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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