Variant report

Variant	rs538757110
Chromosome Location	chr6:119417878-119417879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119417250..119418843-chr6:119419120..119421662,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv3443997	chr6:119416803-119418801	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv7449	chr6:119417257-119418102	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3473231	chr6:119417384-119417935	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3527235	chr6:119417413-119417937	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3527238	chr6:119417420-119417917	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3473228	chr6:119417437-119417903	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3473227	chr6:119417440-119417901	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2763	chr6:119417455-119417944	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3527234	chr6:119417460-119417896	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119415600-119418000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:119416800-119418000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:119417000-119418200	Weak transcription	Placenta	Placenta
4	chr6:119417000-119419000	Enhancers	Primary T cells from cord blood	blood
5	chr6:119417000-119419200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:119417200-119418000	Enhancers	Colon Smooth Muscle	Colon
7	chr6:119417200-119418400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:119417200-119418600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:119417200-119418600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:119417200-119418600	Enhancers	NHEK	skin
11	chr6:119417200-119419000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:119417200-119419000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:119417800-119418000	Flanking Active TSS	Fetal Lung	lung
14	chr6:119417800-119418200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:119417800-119418200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:119417800-119418200	Enhancers	Psoas Muscle	Psoas
17	chr6:119417800-119418200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:119417800-119418200	Flanking Active TSS	Rectal Smooth Muscle	rectum
19	chr6:119417800-119418200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:119417800-119418400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:119417800-119418400	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:119417800-119418400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:119417800-119418400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:119417800-119418400	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr6:119417800-119418400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr6:119417800-119418600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:119417800-119418600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:119417800-119418600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr6:119417800-119418600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:119417800-119418600	Enhancers	Brain Hippocampus Middle	brain
31	chr6:119417800-119418600	Enhancers	HMEC	breast
32	chr6:119417800-119419000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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