Variant report

Variant	rs538763385
Chromosome Location	chr6:34428108-34428109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34390709..34393281-chr6:34426024..34429452,3	K562	blood:
2	chr6:34421599..34423667-chr6:34425310..34428142,2	K562	blood:
3	chr6:34426426..34428741-chr6:34445639..34448002,2	K562	blood:
4	chr6:34213313..34215727-chr6:34426612..34429528,2	K562	blood:
5	chr6:34427141..34428479-chr6:34576718..34577474,3	MCF-7	breast:
6	chr6:34427357..34428310-chr6:34577023..34577948,4	K562	blood:
7	chr6:34422101..34424004-chr6:34426458..34428184,2	K562	blood:
8	chr6:34426702..34428652-chr6:34520960..34523550,2	MCF-7	breast:
9	chr6:34419123..34421664-chr6:34426882..34428491,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv462904	chr6:34416388-34493012	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv602903	chr6:34416388-34493012	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv885786	chr6:34426884-34542662	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34394400-34433200	Weak transcription	Right Atrium	heart
2	chr6:34425000-34429000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:34425600-34429000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:34426000-34430400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:34426000-34430400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:34426400-34430000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:34426600-34428600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:34426600-34429400	Weak transcription	K562	blood
9	chr6:34426600-34430200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:34426800-34428200	Enhancers	HepG2	liver
11	chr6:34427800-34428200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:34427800-34428200	Enhancers	Stomach Mucosa	stomach
13	chr6:34428000-34428200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:34428000-34428800	Enhancers	A549	lung
15	chr6:34428000-34429000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:34428000-34429200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:34428000-34429200	Enhancers	NHEK	skin
18	chr6:34428000-34430200	Weak transcription	Liver	Liver
19	chr6:34428000-34432200	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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