Variant report

Variant	rs538773524
Chromosome Location	chr16:12413558-12413559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:12407586..12410005-chr16:12412153..12414940,2	K562	blood:
2	chr16:12412998..12415794-chr16:12417822..12420522,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv833141	chr16:12314613-12487992	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv457411	chr16:12363304-12520199	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv571462	chr16:12363304-12520199	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1045385	chr16:12376389-12517006	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542748	chr16:12376389-12517006	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv905349	chr16:12408750-12445863	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv827555	chr16:12413244-12429978	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12359800-12418000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr16:12371400-12456800	Weak transcription	Aorta	Aorta
3	chr16:12373400-12414200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr16:12374200-12417200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr16:12395400-12413800	Weak transcription	Left Ventricle	heart
6	chr16:12395600-12417200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr16:12396000-12414800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr16:12396200-12414000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:12396800-12416400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr16:12404000-12414800	Weak transcription	Thymus	Thymus
11	chr16:12404200-12427400	Weak transcription	Primary T cells from cord blood	blood
12	chr16:12405600-12426400	Weak transcription	Lung	lung
13	chr16:12405600-12442400	Weak transcription	Spleen	Spleen
14	chr16:12405800-12417800	Weak transcription	Adipose Nuclei	Adipose
15	chr16:12408800-12417200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr16:12409000-12414000	Weak transcription	NHDF-Ad	bronchial
17	chr16:12409400-12417400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr16:12409400-12417600	Weak transcription	Fetal Intestine Small	intestine
19	chr16:12409400-12417800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr16:12410000-12413800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr16:12410000-12414400	Weak transcription	Fetal Thymus	thymus
22	chr16:12410000-12456600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr16:12410200-12424400	Weak transcription	Right Atrium	heart
24	chr16:12410200-12464800	Weak transcription	Gastric	stomach
25	chr16:12410600-12415000	Weak transcription	Pancreas	Pancrea
26	chr16:12410800-12414800	Genic enhancers	Primary B cells from peripheral blood	blood
27	chr16:12410800-12414800	Weak transcription	Stomach Mucosa	stomach
28	chr16:12411400-12414000	Weak transcription	GM12878-XiMat	blood
29	chr16:12411600-12413800	Weak transcription	Primary B cells from cord blood	blood
30	chr16:12411600-12416000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr16:12411800-12413600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr16:12411800-12413600	Weak transcription	Fetal Brain Male	brain
33	chr16:12412000-12414800	Weak transcription	Esophagus	oesophagus
34	chr16:12412200-12414000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr16:12412200-12416000	Enhancers	HepG2	liver
36	chr16:12412400-12413600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr16:12412400-12415200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr16:12412600-12414200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr16:12412600-12414400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr16:12412800-12417000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr16:12413000-12414400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr16:12413000-12415200	Enhancers	NH-A	brain
43	chr16:12413200-12414000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr16:12413200-12414200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr16:12413200-12414200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr16:12413200-12414400	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr16:12413200-12414400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr16:12413200-12414600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr16:12413200-12414600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr16:12413200-12415600	Enhancers	Right Ventricle	heart

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