Variant report

Variant	rs538777067
Chromosome Location	chr15:75305489-75305490
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75305447-75305531	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75304706..75307905-chr15:75494120..75496489,3	MCF-7	breast:
2	chr15:75287065..75288881-chr15:75303278..75305678,2	MCF-7	breast:
3	chr15:75299758..75302262-chr15:75305323..75307805,2	K562	blood:
4	chr15:75286200..75292858-chr15:75303462..75309796,11	MCF-7	breast:
5	chr15:75304775..75307425-chr15:75315753..75317450,2	MCF-7	breast:

No data

Variant related genes	Relation type
SCAMP5	TF binding region
ENSG00000198794	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000138621	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv527237	chr15:75305040-75321262	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75289000-75315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75289400-75305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:75289400-75315400	Weak transcription	Fetal Kidney	kidney
4	chr15:75290000-75309400	Weak transcription	Gastric	stomach
5	chr15:75290000-75316000	Weak transcription	Small Intestine	intestine
6	chr15:75293200-75315800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:75294600-75312200	Weak transcription	Adipose Nuclei	Adipose
8	chr15:75294600-75315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:75298200-75305600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:75300400-75312200	Weak transcription	Spleen	Spleen
11	chr15:75301000-75315400	Weak transcription	Thymus	Thymus
12	chr15:75301800-75306600	Weak transcription	Placenta	Placenta
13	chr15:75302000-75314000	Strong transcription	Fetal Intestine Small	intestine
14	chr15:75302200-75313200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:75302200-75313400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:75303600-75309800	Strong transcription	Brain Germinal Matrix	brain
17	chr15:75303600-75313800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:75303800-75309400	Strong transcription	Brain Cingulate Gyrus	brain
19	chr15:75303800-75313800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:75303800-75314000	Strong transcription	Fetal Brain Female	brain
21	chr15:75304000-75306800	Strong transcription	Fetal Intestine Large	intestine
22	chr15:75304000-75306800	Strong transcription	Pancreas	Pancrea
23	chr15:75304000-75307600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:75304000-75308800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:75304000-75309400	Strong transcription	Brain Hippocampus Middle	brain
26	chr15:75304000-75309400	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr15:75304000-75315800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:75304000-75316000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr15:75304200-75307400	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr15:75304200-75310000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:75304400-75306000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:75304400-75307000	Strong transcription	HepG2	liver
33	chr15:75304400-75307400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr15:75304400-75313600	Strong transcription	Fetal Stomach	stomach
35	chr15:75304600-75306000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:75304600-75313200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:75304800-75306800	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr15:75304800-75310200	Strong transcription	Brain Angular Gyrus	brain
39	chr15:75304800-75312600	Strong transcription	Brain Anterior Caudate	brain
40	chr15:75304800-75314000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:75305000-75306000	Strong transcription	Brain Substantia Nigra	brain
42	chr15:75305000-75306600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:75305000-75307600	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:75305000-75315800	Weak transcription	Right Ventricle	heart
45	chr15:75305200-75305600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr15:75305400-75305800	Strong transcription	Pancreatic Islets	Pancreatic Islet
47	chr15:75305400-75306200	Strong transcription	Fetal Brain Male	brain
48	chr15:75305400-75307200	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:75305400-75307400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr15:75305400-75309200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links