Variant report

Variant	rs538787225
Chromosome Location	chr21:40734989-40734990
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913744	chr21:40670167-40757973	Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv1059420	chr21:40684295-40745952	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv1059868	chr21:40711535-41043291	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv2421785	chr21:40734723-40737012	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv442497	chr21:40734922-40737012	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40734000-40735000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr21:40734000-40735000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr21:40734000-40736600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr21:40734000-40736800	Enhancers	Primary hematopoietic stem cells	blood
5	chr21:40734000-40737400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr21:40734400-40737800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr21:40734600-40735000	Bivalent Enhancer	Primary B cells from cord blood	blood
8	chr21:40734800-40735000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr21:40734800-40735400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr21:40734800-40735600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr21:40734800-40736600	Enhancers	K562	blood
12	chr21:40734800-40738200	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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