Variant report

Variant	rs538809283
Chromosome Location	chr14:56595909-56595910
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56587400-56596000	Weak transcription	Right Atrium	heart
2	chr14:56587400-56599200	Weak transcription	Colonic Mucosa	Colon
3	chr14:56587600-56596200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:56587600-56596200	Weak transcription	Fetal Stomach	stomach
5	chr14:56587600-56596200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:56587600-56597000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:56587600-56598000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:56589200-56596000	Weak transcription	Adipose Nuclei	Adipose
9	chr14:56589400-56596000	Weak transcription	Primary B cells from cord blood	blood
10	chr14:56589400-56596200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:56590200-56597000	Enhancers	Thymus	Thymus
12	chr14:56591000-56599600	Enhancers	Fetal Thymus	thymus
13	chr14:56591200-56596200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:56591200-56597000	Enhancers	Fetal Brain Male	brain
15	chr14:56591600-56596200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:56591600-56596200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:56591600-56596600	Weak transcription	Fetal Lung	lung
18	chr14:56591600-56598200	Weak transcription	Fetal Kidney	kidney
19	chr14:56592000-56597800	Weak transcription	Aorta	Aorta
20	chr14:56592000-56598800	Weak transcription	NHLF	lung
21	chr14:56592000-56601800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:56592400-56599800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:56592400-56600400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:56592600-56596000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:56592600-56597200	Enhancers	Pancreas	Pancrea
26	chr14:56592800-56596200	Enhancers	Dnd41	blood
27	chr14:56593000-56596200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:56593000-56596600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:56593200-56596400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:56593200-56612800	Weak transcription	Brain Angular Gyrus	brain
31	chr14:56593400-56596400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:56593600-56596000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr14:56593600-56596000	Weak transcription	Esophagus	oesophagus
34	chr14:56593600-56596600	Enhancers	Fetal Brain Female	brain
35	chr14:56593600-56598200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:56593800-56598000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr14:56594200-56596200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:56594200-56598200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr14:56594200-56598400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:56594200-56599400	Enhancers	Brain Germinal Matrix	brain
41	chr14:56594400-56596400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr14:56594400-56596400	Weak transcription	Brain Substantia Nigra	brain
43	chr14:56594400-56597800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr14:56594400-56597800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr14:56594400-56598000	Weak transcription	Primary T cells from cord blood	blood
46	chr14:56594600-56600600	Enhancers	Stomach Mucosa	stomach
47	chr14:56594600-56601400	Enhancers	Colon Smooth Muscle	Colon
48	chr14:56594800-56597000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr14:56594800-56597200	Enhancers	H1 Cell Line	embryonic stem cell
50	chr14:56594800-56597200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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