Variant report

Variant	rs538827336
Chromosome Location	chr6:33623200-33623201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33612102..33615096-chr6:33621382..33624139,2	K562	blood:
2	chr6:33606446..33608030-chr6:33621770..33624692,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv470811	chr6:33622933-33647651	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33602400-33636400	Weak transcription	HSMMtube	muscle
2	chr6:33602600-33623400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:33602600-33624400	Weak transcription	Small Intestine	intestine
4	chr6:33602600-33625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33602600-33625800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:33602600-33631600	Weak transcription	Osteobl	bone
7	chr6:33602800-33624400	Weak transcription	Pancreas	Pancrea
8	chr6:33603000-33624000	Weak transcription	HSMM	muscle
9	chr6:33603000-33628600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:33603400-33626000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:33603400-33640400	Weak transcription	HUVEC	blood vessel
12	chr6:33603400-33641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:33604800-33623400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:33605000-33624400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:33605000-33625400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:33605200-33624000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:33605200-33624400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:33605200-33636400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:33606600-33633000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:33606800-33626200	Weak transcription	A549	lung
21	chr6:33606800-33646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:33608200-33640800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:33609600-33623600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:33610400-33623600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:33610400-33624000	Weak transcription	Fetal Lung	lung
26	chr6:33610400-33624000	Weak transcription	Stomach Mucosa	stomach
27	chr6:33610400-33626000	Weak transcription	K562	blood
28	chr6:33611400-33626800	Weak transcription	Right Ventricle	heart
29	chr6:33611400-33643400	Weak transcription	Left Ventricle	heart
30	chr6:33613000-33659400	Strong transcription	Fetal Intestine Small	intestine
31	chr6:33613200-33660400	Strong transcription	Thymus	Thymus
32	chr6:33613400-33635400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:33613600-33635000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:33614400-33636200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr6:33615000-33660800	Strong transcription	Fetal Intestine Large	intestine
36	chr6:33615600-33626000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:33616600-33631400	Weak transcription	GM12878-XiMat	blood
38	chr6:33617200-33629200	Strong transcription	Hela-S3	cervix
39	chr6:33618200-33623200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:33619000-33632800	Strong transcription	NHEK	skin
41	chr6:33619400-33629600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr6:33619600-33628400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr6:33619600-33660800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr6:33619800-33624400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:33620000-33632400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:33620600-33624600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:33621000-33629200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:33621000-33659400	Strong transcription	Duodenum Mucosa	Duodenum
49	chr6:33621200-33636200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:33621200-33636400	Strong transcription	Primary T cells from cord blood	blood

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