Variant report

Variant	rs538827438
Chromosome Location	chr3:141205930-141205931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141204551..141207938-chr3:141241119..141245308,6	MCF-7	breast:
2	chr12:72057082..72057894-chr3:141205927..141206704,2	HCT-116	colon:
3	chr3:141189849..141195094-chr3:141204829..141208801,7	MCF-7	breast:
4	chr18:12883912..12884619-chr3:141205723..141206246,2	Hela-S3	cervix:
5	chr3:141085187..141087816-chr3:141204878..141206678,4	MCF-7	breast:
6	chr3:141205921..141208089-chr3:141225217..141227159,2	MCF-7	breast:
7	chr3:141205894..141211656-chr3:141222007..141226023,7	K562	blood:
8	chr12:120729229..120730031-chr3:141205706..141206699,3	Hela-S3	cervix:
9	chr3:141205080..141206779-chr6:76458156..76460847,2	MCF-7	breast:
10	chr3:141085737..141089975-chr3:141204779..141207356,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196586	Chromatin interaction
ENSG00000249417	Chromatin interaction
ENSG00000177311	Chromatin interaction
ENSG00000133858	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000175354	Chromatin interaction
ENSG00000250170	Chromatin interaction
ENSG00000215606	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3423260	chr3:141204887-141207435	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141204200-141208000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr3:141204800-141207400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr3:141205000-141207000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:141205000-141207000	Active TSS	Fetal Kidney	kidney
5	chr3:141205000-141207400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr3:141205000-141207600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr3:141205200-141206000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:141205200-141206200	Active TSS	Brain Germinal Matrix	brain
9	chr3:141205200-141207000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr3:141205200-141207000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:141205200-141207000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:141205200-141207000	Active TSS	Fetal Brain Female	brain
13	chr3:141205200-141207200	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr3:141205200-141207200	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr3:141205200-141207200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:141205200-141207200	Active TSS	Brain Substantia Nigra	brain
17	chr3:141205200-141207400	Active TSS	H1 Cell Line	embryonic stem cell
18	chr3:141205200-141207400	Active TSS	Brain Cingulate Gyrus	brain
19	chr3:141205400-141206800	Active TSS	Brain Hippocampus Middle	brain
20	chr3:141205400-141206800	Active TSS	Stomach Smooth Muscle	stomach
21	chr3:141205400-141207000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:141205400-141207000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:141205400-141207000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr3:141205400-141207000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:141205400-141207000	Active TSS	Aorta	Aorta
26	chr3:141205400-141207000	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr3:141205400-141207000	Active TSS	Esophagus	oesophagus
28	chr3:141205400-141207000	Active TSS	Gastric	stomach
29	chr3:141205400-141207000	Active TSS	Left Ventricle	heart
30	chr3:141205400-141207000	Active TSS	Ovary	ovary
31	chr3:141205400-141207000	Active TSS	Pancreas	Pancrea
32	chr3:141205400-141207000	Active TSS	Placenta Amnion	Placenta Amnion
33	chr3:141205400-141207000	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr3:141205400-141207000	Active TSS	Small Intestine	intestine
35	chr3:141205400-141207000	Active TSS	A549	lung
36	chr3:141205400-141207000	Active TSS	HMEC	breast
37	chr3:141205400-141207200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr3:141205400-141207200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:141205400-141207200	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr3:141205400-141207200	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr3:141205400-141207200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:141205400-141207200	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr3:141205400-141207200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:141205400-141207200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:141205400-141207200	Active TSS	Brain Angular Gyrus	brain
46	chr3:141205400-141207200	Active TSS	Fetal Lung	lung
47	chr3:141205400-141207200	Active TSS	Fetal Stomach	stomach
48	chr3:141205400-141207200	Active TSS	Psoas Muscle	Psoas
49	chr3:141205400-141207200	Active TSS	NHLF	lung
50	chr3:141205400-141207400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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