The 2.0 version of rSNPBase

Variant report

Variant rs538832137
Chromosome Location chr5:58487612-58487613
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58449800-58489400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr5:58474400-58520000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:58474800-58491000 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr5:58479800-58489800 Weak transcription Gastric stomach
5 chr5:58480200-58488800 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr5:58484400-58489200 Weak transcription Hela-S3 cervix
7 chr5:58484400-58489400 Weak transcription HSMMtube muscle
8 chr5:58484400-58489800 Active TSS Right Ventricle heart
9 chr5:58484600-58495600 Weak transcription Fetal Kidney kidney
10 chr5:58484800-58489400 Weak transcription NH-A brain
11 chr5:58484800-58489800 Weak transcription Fetal Heart heart
12 chr5:58484800-58491000 Weak transcription Fetal Stomach stomach
13 chr5:58484800-58501200 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr5:58485000-58489000 Weak transcription Primary B cells from peripheral blood blood
15 chr5:58485000-58489200 Weak transcription Muscle Satellite Cultured Cells --
16 chr5:58485000-58489200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr5:58485000-58489800 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr5:58485000-58491200 Weak transcription Duodenum Mucosa Duodenum
19 chr5:58485000-58491800 Weak transcription Stomach Smooth Muscle stomach
20 chr5:58485000-58492600 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr5:58485000-58499000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr5:58485000-58505200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr5:58485000-58518800 Weak transcription Primary hematopoietic stem cells blood
24 chr5:58485400-58489400 Weak transcription Osteobl bone
25 chr5:58485600-58488200 Weak transcription Left Ventricle heart
26 chr5:58485600-58491000 Weak transcription Aorta Aorta
27 chr5:58485600-58500400 Weak transcription Psoas Muscle Psoas
28 chr5:58485600-58501600 Weak transcription HUVEC blood vessel
29 chr5:58485600-58512400 Weak transcription Pancreas Pancrea
30 chr5:58485600-58518200 Weak transcription Fetal Muscle Trunk muscle
31 chr5:58485800-58489600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr5:58485800-58489600 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr5:58486000-58488600 Weak transcription Placenta Amnion Placenta Amnion
34 chr5:58486000-58489400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr5:58486000-58489400 Weak transcription Fetal Intestine Small intestine
36 chr5:58486000-58489400 Weak transcription Fetal Muscle Leg muscle
37 chr5:58486000-58489600 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr5:58486000-58494200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr5:58486000-58508600 Weak transcription Fetal Intestine Large intestine
40 chr5:58486600-58489800 Weak transcription Colon Smooth Muscle Colon
41 chr5:58486600-58492000 Weak transcription Rectal Smooth Muscle rectum
42 chr5:58486800-58488000 Enhancers A549 lung
43 chr5:58486800-58492200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015