Variant report

Variant	rs538839614
Chromosome Location	chr14:56690272-56690273
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56675081..56677798-chr14:56689013..56691356,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56662600-56693000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:56665400-56691600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:56673000-56694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:56673400-56694600	Weak transcription	Primary B cells from cord blood	blood
5	chr14:56682200-56699200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr14:56684400-56691800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:56684400-56692600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr14:56684600-56692400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr14:56686600-56691200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:56686800-56694200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:56686800-56702000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:56687000-56690600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:56687000-56690600	Weak transcription	Fetal Intestine Large	intestine
14	chr14:56687000-56691000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:56687000-56691000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:56687000-56691000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr14:56687000-56691000	Weak transcription	Small Intestine	intestine
18	chr14:56687000-56691400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:56687200-56690400	Weak transcription	A549	lung
20	chr14:56687200-56691000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:56687200-56691600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr14:56687800-56691000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:56687800-56694800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:56688000-56690800	Weak transcription	Fetal Kidney	kidney
25	chr14:56688000-56690800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:56688000-56707800	Weak transcription	Spleen	Spleen
27	chr14:56688200-56690600	Weak transcription	Fetal Brain Male	brain
28	chr14:56688200-56691600	Weak transcription	Gastric	stomach
29	chr14:56688200-56692400	Weak transcription	Lung	lung
30	chr14:56688200-56694200	Weak transcription	Left Ventricle	heart
31	chr14:56688400-56691000	Weak transcription	Fetal Stomach	stomach
32	chr14:56688400-56691600	Weak transcription	Fetal Muscle Leg	muscle
33	chr14:56688400-56691800	Weak transcription	Brain Anterior Caudate	brain
34	chr14:56688400-56694200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr14:56688800-56690800	Weak transcription	Stomach Mucosa	stomach
36	chr14:56688800-56691400	Weak transcription	Brain Germinal Matrix	brain
37	chr14:56688800-56691600	Weak transcription	Aorta	Aorta
38	chr14:56688800-56691800	Weak transcription	Thymus	Thymus
39	chr14:56688800-56695400	Weak transcription	Fetal Thymus	thymus
40	chr14:56689000-56691600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:56689200-56690800	Weak transcription	Fetal Brain Female	brain
42	chr14:56689200-56691400	Weak transcription	Fetal Lung	lung
43	chr14:56689200-56694200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr14:56689400-56692200	Weak transcription	Primary T cells from cord blood	blood
45	chr14:56689600-56692800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:56689600-56694800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:56689600-56695200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:56689600-56695400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:56689600-56699200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr14:56689600-56710000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links