Variant report

Variant	rs538840004
Chromosome Location	chr13:111597032-111597033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:111596388..111597279-chr13:111699232..111699797,2	K562	blood:
2	chr13:111596690..111597257-chr13:111659947..111660486,2	MCF-7	breast:
3	chr13:111596307..111597526-chr13:111702246..111703284,7	K562	blood:
4	chr13:111596412..111597239-chr13:111702359..111703278,4	MCF-7	breast:
5	chr13:111596342..111598319-chr13:111607475..111610357,3	K562	blood:
6	chr13:111596301..111597417-chr13:111701936..111703237,11	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGEF7-6	chr13:111596587-111597078	l_919_chr13:111595710-111597078_testes

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044340	chr13:111234073-111692994	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
2	nsv1048700	chr13:111265350-111658617	Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
3	nsv1050379	chr13:111516429-111701302	Genic enhancers Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv541927	chr13:111516429-111701302	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv456121	chr13:111583422-111660113	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv563162	chr13:111583422-111660113	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv563163	chr13:111586298-111603888	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv563164	chr13:111595399-111625091	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv977280	chr13:111596117-111604319	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1045197	chr13:111596127-111642187	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1048206	chr13:111596127-111651763	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1037826	chr13:111596401-111639765	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111595800-111597200	Enhancers	NHDF-Ad	bronchial
2	chr13:111595800-111597600	Enhancers	Hela-S3	cervix
3	chr13:111595800-111598600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:111596000-111597200	Enhancers	HSMM	muscle
5	chr13:111596000-111597400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:111596000-111597800	Enhancers	K562	blood
7	chr13:111596000-111598400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:111596000-111598400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr13:111596200-111597200	Enhancers	NHLF	lung
10	chr13:111596200-111597400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:111596200-111597400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:111596200-111597400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:111596200-111597600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr13:111596200-111597800	Enhancers	Fetal Muscle Leg	muscle
15	chr13:111596400-111597400	Enhancers	Adipose Nuclei	Adipose
16	chr13:111596600-111597200	Enhancers	GM12878-XiMat	blood
17	chr13:111596600-111597200	Flanking Active TSS	HUVEC	blood vessel
18	chr13:111596600-111597400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:111596600-111597400	Weak transcription	HSMMtube	muscle
20	chr13:111596600-111597600	Enhancers	Lung	lung
21	chr13:111596600-111598000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr13:111596600-111598800	Enhancers	Left Ventricle	heart
23	chr13:111596800-111597400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr13:111596800-111597600	Enhancers	Right Atrium	heart
25	chr13:111596800-111598800	Enhancers	Stomach Mucosa	stomach
26	chr13:111596800-111598800	Enhancers	Spleen	Spleen
27	chr13:111597000-111597200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr13:111597000-111598000	Weak transcription	Placenta	Placenta
29	chr13:111597000-111598200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:111597000-111598800	Enhancers	Right Ventricle	heart
31	chr13:111597000-111604200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links