Variant report

Variant	rs538858400
Chromosome Location	chr1:85230433-85230434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85220070..85222674-chr1:85230426..85232342,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947190	chr1:85229432-85235799	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85225800-85233600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:85228800-85238200	Weak transcription	Stomach Mucosa	stomach
3	chr1:85229200-85230600	Enhancers	Fetal Brain Female	brain
4	chr1:85229400-85230600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:85229400-85230600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:85229400-85230600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:85229400-85230800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:85229400-85230800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:85229400-85230800	Enhancers	Brain Anterior Caudate	brain
10	chr1:85229600-85230800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:85229600-85230800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:85230000-85230600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr1:85230000-85230600	Enhancers	Brain Cingulate Gyrus	brain
14	chr1:85230000-85230600	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr1:85230000-85230600	Enhancers	Fetal Brain Male	brain
16	chr1:85230000-85230800	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr1:85230000-85231200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:85230000-85231400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:85230000-85231800	Weak transcription	Fetal Heart	heart
20	chr1:85230200-85230600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:85230400-85230600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
22	chr1:85230400-85230600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
23	chr1:85230400-85230800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
24	chr1:85230400-85230800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:85230400-85231200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links