Variant report

Variant	rs538885318
Chromosome Location	chr6:34967546-34967547
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv5257	chr6:34925313-34970101	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3360031	chr6:34966453-34972064	Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3446976	chr6:34966467-34971758	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
3	chr6:34932400-34981800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:34939400-34978200	Weak transcription	Psoas Muscle	Psoas
5	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:34955000-34973600	Weak transcription	Stomach Mucosa	stomach
7	chr6:34955400-34967600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:34955400-34967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:34955600-34969600	Weak transcription	Fetal Heart	heart
10	chr6:34959200-34979000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:34960200-34979200	Weak transcription	HUVEC	blood vessel
12	chr6:34960200-34988200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:34960800-34967600	Weak transcription	K562	blood
14	chr6:34961000-34985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:34961200-34983400	Weak transcription	Fetal Kidney	kidney
16	chr6:34961600-34982200	Weak transcription	Right Ventricle	heart
17	chr6:34962200-34982200	Weak transcription	Hela-S3	cervix
18	chr6:34962200-34984800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:34962800-34970400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:34962800-34978800	Weak transcription	Fetal Lung	lung
21	chr6:34962800-34983600	Weak transcription	Osteobl	bone
22	chr6:34962800-34985200	Weak transcription	Brain Germinal Matrix	brain
23	chr6:34963000-34968600	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:34963000-34968800	Weak transcription	Gastric	stomach
25	chr6:34963000-34969400	Weak transcription	Esophagus	oesophagus
26	chr6:34963000-34969600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:34963000-34969800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:34963000-34970000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:34963000-34970000	Weak transcription	HSMMtube	muscle
30	chr6:34963000-34970400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:34963000-34975400	Weak transcription	Brain Angular Gyrus	brain
32	chr6:34963000-34976000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:34963000-34976000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:34963000-34978000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:34963000-34979400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:34963000-34982200	Weak transcription	Aorta	Aorta
37	chr6:34963000-34982200	Weak transcription	Pancreas	Pancrea
38	chr6:34963000-34982400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:34963000-34982400	Weak transcription	Fetal Stomach	stomach
40	chr6:34963000-34982600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:34963000-34985000	Weak transcription	Fetal Brain Female	brain
42	chr6:34963000-34985200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:34963000-34985400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:34963000-34985600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:34963000-34985600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:34963000-34985600	Weak transcription	NHEK	skin
47	chr6:34963000-34987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:34963000-34989400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:34963200-34970200	Weak transcription	Dnd41	blood
50	chr6:34963200-34982200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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