Variant report

Variant	rs538945487
Chromosome Location	chr5:35789999-35790000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35787984..35790263-chr5:35793373..35795017,2	MCF-7	breast:
2	chr5:35784897..35787598-chr5:35787752..35790021,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3389169	chr5:35789843-35790614	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35786400-35790000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:35787000-35792200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr5:35787400-35793200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:35788400-35790200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:35788400-35791800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr5:35788400-35796800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:35788600-35791600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:35788800-35790200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:35788800-35791400	Enhancers	Primary T cells from cord blood	blood
11	chr5:35788800-35791400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr5:35788800-35791400	Enhancers	NHLF	lung
13	chr5:35788800-35796800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr5:35789000-35791200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:35789000-35791200	Enhancers	NHDF-Ad	bronchial
16	chr5:35789400-35793400	Weak transcription	Thymus	Thymus
17	chr5:35789400-35793600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr5:35789400-35794000	Weak transcription	Dnd41	blood
19	chr5:35789600-35791000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:35789600-35791000	Enhancers	Osteobl	bone
21	chr5:35789800-35790000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:35789800-35791200	Enhancers	HSMM	muscle
23	chr5:35789800-35791400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:35789800-35793200	Weak transcription	Fetal Thymus	thymus

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