Variant report

Variant	rs538955183
Chromosome Location	chr3:146271902-146271903
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
2	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146267800-146272000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:146268200-146272200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:146268800-146272400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:146269000-146272000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:146269200-146273200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:146269400-146272000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:146270000-146284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:146270200-146274200	Weak transcription	HMEC	breast
9	chr3:146271200-146272600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:146271400-146272200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:146271400-146272400	Enhancers	Dnd41	blood
12	chr3:146271600-146272400	Active TSS	Primary B cells from cord blood	blood
13	chr3:146271600-146272600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr3:146271600-146272600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:146271800-146272000	Enhancers	GM12878-XiMat	blood
16	chr3:146271800-146272200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr3:146271800-146272600	Enhancers	K562	blood
18	chr3:146271800-146272800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links