Variant report

Variant	rs538960586
Chromosome Location	chr4:130279837-130279838
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1805721	chr4:130277165-130282466	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	esv1811943	chr4:130277165-130282466	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3466210	chr4:130278902-130283300	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130277200-130284000	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:130277600-130284200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:130279000-130281600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:130279200-130281600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:130279400-130280400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:130279600-130280000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:130279600-130280200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:130279600-130280400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:130279600-130280400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:130279600-130280400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:130279600-130280400	Enhancers	HUVEC	blood vessel
12	chr4:130279600-130280400	Enhancers	NH-A	brain
13	chr4:130279800-130280200	Enhancers	HSMMtube	muscle
14	chr4:130279800-130280400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:130279800-130280400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:130279800-130280400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:130279800-130280400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:130279800-130281200	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links