The 2.0 version of rSNPBase

Variant report

Variant rs538962003
Chromosome Location chr1:214688695-214688696
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214665400-214705400 Weak transcription Right Ventricle heart
2 chr1:214669800-214700400 Weak transcription Aorta Aorta
3 chr1:214677200-214690200 Weak transcription Small Intestine intestine
4 chr1:214681600-214690200 Weak transcription Pancreas Pancrea
5 chr1:214686600-214690400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
6 chr1:214686800-214688800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr1:214686800-214689000 Enhancers NHLF lung
8 chr1:214686800-214690000 Enhancers iPS-15b Cell Line embryonic stem cell
9 chr1:214686800-214693000 Enhancers Muscle Satellite Cultured Cells --
10 chr1:214686800-214694400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr1:214687000-214688800 Enhancers Skeletal Muscle Male skeletal muscle
12 chr1:214687000-214690400 Enhancers NHDF-Ad bronchial
13 chr1:214687200-214689000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:214687400-214690400 Enhancers HUVEC blood vessel
15 chr1:214687600-214688800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:214687600-214689800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:214687600-214689800 Enhancers Primary monocytes fromperipheralblood blood
18 chr1:214687600-214690600 Enhancers Adipose Nuclei Adipose
19 chr1:214687600-214690800 Enhancers Fetal Intestine Large intestine
20 chr1:214687800-214689600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:214687800-214689800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:214687800-214689800 Enhancers NHEK skin
23 chr1:214687800-214690000 Enhancers Duodenum Smooth Muscle Duodenum
24 chr1:214687800-214698400 Weak transcription ES-WA7 Cell Line embryonic stem cell
25 chr1:214688000-214689200 Enhancers Primary T cells from cord blood blood
26 chr1:214688000-214689400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:214688000-214689800 Enhancers Primary neutrophils fromperipheralblood blood
28 chr1:214688000-214690600 Enhancers HMEC breast
29 chr1:214688200-214688800 Enhancers Fetal Kidney kidney
30 chr1:214688200-214689000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr1:214688200-214689000 Enhancers A549 lung
32 chr1:214688200-214689400 Weak transcription Psoas Muscle Psoas
33 chr1:214688200-214689400 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr1:214688200-214689600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:214688200-214690200 Weak transcription Fetal Heart heart
36 chr1:214688200-214690600 Enhancers HUES64 Cell Line embryonic stem cell
37 chr1:214688200-214692000 Enhancers ES-I3 Cell Line embryonic stem cell
38 chr1:214688200-214693800 Weak transcription H9 Cell Line embryonic stem cell
39 chr1:214688400-214688800 Enhancers Skeletal Muscle Female skeletal muscle
40 chr1:214688400-214689000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:214688400-214689200 Weak transcription HSMMtube muscle
42 chr1:214688400-214689400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr1:214688400-214689400 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr1:214688400-214689400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr1:214688400-214689400 Weak transcription Placenta Placenta
46 chr1:214688400-214689400 Weak transcription Fetal Stomach stomach
47 chr1:214688400-214689400 Weak transcription Hela-S3 cervix
48 chr1:214688400-214689600 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:214688400-214689600 Weak transcription Esophagus oesophagus
50 chr1:214688400-214689600 Weak transcription Left Ventricle heart

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015