Variant report

Variant	rs538980390
Chromosome Location	chr15:49753543-49753544
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49753086..49754670-chr15:49761846..49764653,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv974574	chr15:49752716-49764974	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49749200-49753600	Weak transcription	Fetal Lung	lung
2	chr15:49750400-49754200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:49750600-49754600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:49751600-49753600	Weak transcription	HSMMtube	muscle
5	chr15:49752400-49754000	Weak transcription	Psoas Muscle	Psoas
6	chr15:49752400-49755000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:49752400-49764000	Weak transcription	HSMM	muscle
8	chr15:49752600-49753600	Weak transcription	Adipose Nuclei	Adipose
9	chr15:49752600-49753800	Genic enhancers	Osteobl	bone
10	chr15:49752600-49755400	Enhancers	Fetal Heart	heart
11	chr15:49752600-49755800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:49752600-49758200	Enhancers	NHDF-Ad	bronchial
13	chr15:49752800-49754200	Weak transcription	NHLF	lung
14	chr15:49752800-49757800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:49753000-49756000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr15:49753200-49753600	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:49753200-49753800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:49753200-49754000	Weak transcription	Ovary	ovary
19	chr15:49753200-49754400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr15:49753200-49754600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:49753200-49758800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:49753400-49753800	Enhancers	Hela-S3	cervix
23	chr15:49753400-49754200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:49753400-49754600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:49753400-49755000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links