Variant report

Variant	rs538999625
Chromosome Location	chr7:140153848-140153849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140143508..140145426-chr7:140152981..140155575,2	K562	blood:
2	chr7:140147176..140149855-chr7:140152753..140155201,2	MCF-7	breast:
3	chr7:140152800..140155716-chr7:140177894..140179850,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv966896	chr7:140153046-140156664	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140133200-140154200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:140135800-140156000	Weak transcription	NHEK	skin
4	chr7:140136600-140154600	Weak transcription	Fetal Brain Male	brain
5	chr7:140142000-140154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:140144000-140154200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:140144000-140154200	Weak transcription	A549	lung
8	chr7:140144000-140154400	Weak transcription	Pancreas	Pancrea
9	chr7:140146400-140154400	Weak transcription	HMEC	breast
10	chr7:140146800-140154400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:140147600-140154600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:140147800-140154000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:140149600-140154200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:140149600-140155000	Weak transcription	Psoas Muscle	Psoas
15	chr7:140149800-140154200	Weak transcription	Right Ventricle	heart
16	chr7:140149800-140154600	Weak transcription	HSMMtube	muscle
17	chr7:140150800-140171800	Strong transcription	Fetal Thymus	thymus
18	chr7:140151000-140154200	Weak transcription	HUVEC	blood vessel
19	chr7:140151000-140156200	Strong transcription	Fetal Brain Female	brain
20	chr7:140151000-140171600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:140151000-140171600	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:140151000-140173400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr7:140151200-140154200	Weak transcription	Esophagus	oesophagus
24	chr7:140151200-140160600	Weak transcription	Stomach Mucosa	stomach
25	chr7:140151200-140161800	Strong transcription	Placenta	Placenta
26	chr7:140151200-140171600	Strong transcription	Adipose Nuclei	Adipose
27	chr7:140151200-140172200	Strong transcription	Fetal Stomach	stomach
28	chr7:140151400-140155400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr7:140151400-140156200	Strong transcription	Fetal Intestine Large	intestine
30	chr7:140151400-140156800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:140151400-140157200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:140151400-140161000	Strong transcription	Primary B cells from cord blood	blood
33	chr7:140151400-140162400	Strong transcription	Thymus	Thymus
34	chr7:140151400-140163600	Strong transcription	Primary T cells from cord blood	blood
35	chr7:140151400-140171800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr7:140151400-140172200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr7:140151600-140154200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr7:140151600-140154400	Weak transcription	Small Intestine	intestine
39	chr7:140151600-140154400	Weak transcription	Hela-S3	cervix
40	chr7:140151600-140156000	Strong transcription	Brain Cingulate Gyrus	brain
41	chr7:140151600-140157800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:140151600-140172200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:140151800-140154200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr7:140151800-140155000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:140151800-140155200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
46	chr7:140151800-140155800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:140151800-140172200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:140151800-140176600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr7:140152000-140154800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr7:140152200-140156400	Strong transcription	Liver	Liver

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